« Back to Arabidopsis halleri search


Detailed information on CNT30479018


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Arabidopsis halleriOryza sativa18.2726.5891.5359forward
CNT30521211Arabidopsis halleriSetaria italica24.7729.283.7580forward
CNT30640495Arabidopsis halleriNymphaea colorata52.6341.9883.53170forward
CNT30535611Arabidopsis halleriEucalyptus grandis58.27.4881.91188forward
CNT30404377Arabidopsis halleriBeta vulgaris40.5633.4283.21131forward
CNT30491218Arabidopsis halleriOlea europaea22.9110.7487.8474forward
CNT30224773Arabidopsis halleriHordeum vulgare24.7732.6583.7580forward
CNT30395728Arabidopsis halleriTriticum turgidum37.7727.2381.97122forward
CNT30569551Arabidopsis halleriActinidia chinensis56.6618.1580.87183forward
CNT30172487Arabidopsis halleriTrifolium pratense63.4763.6685.85205forward
CNT30440625Arabidopsis halleriAegilops tauschii30.3434.8882.6598forward
CNT30665093Arabidopsis halleriTriticum dicoccoides45.246.3582.19146forward
CNT3079894Arabidopsis halleriBrassica juncea65.0275.2791.43210forward
CNT30447372Arabidopsis halleriSaccharum spontaneum45.245.9181.51146forward
CNT301752Arabidopsis halleriZea mays58.272.0379.26188forward
CNT30685689Arabidopsis halleriTriticum urartu24.7731.0183.7580forward
CNT30367474Arabidopsis halleriSorghum bicolor37.7742.9683.61122forward
CNT30369767Arabidopsis halleriOryza glumipatula37.1546.6983.33120forward
CNT3024414Arabidopsis halleriPopulus trichocarpa58.261.6484.57188forward
CNT30115466Arabidopsis halleriOryza nivara24.7728.888580forward

Expression of CNT30479018

Peptides detected in this lncRNA

>peptide 1 (91 aa)
ENSVNRVHSDLVLSSITDQPLGVGESNVRRSGSVSLIISDDLNTVVLPYSDARVRSTKIDTDSWSFSFTRHFFIGRFGATRDLRTETEKKE*

>peptide 2 (35 aa)
KTVLTGFIATWFLAASPINLSESVKATYDGVVLFP*

>peptide 3 (43 aa)
MISTRSCCHTPTQEYVVPRSIPIAGPSPLPDIFLSEDLELQEI*

Sequence

>CNT30479018
CGAAAACAGTGTTAACCGGGTTCATAGCGACCTGGTTCTTAGCAGCATCACCGATCAACCTCTCGGAGTCGGTGAAAGCAACGTACGACGGAGTGGTTCT
GTTTCCTTGATCATTAGCGATGATCTCAACACGGTCGTGTTGCCATACTCCGACGCAAGAGTACGTAGTACCAAGATCGATACCGATAGCTGGTCCTTCT
CCTTTACCCGACATTTTTTTATCGGAAGATTTGGAGCTACAAGAGATCTAAGAACAGAGACTGAGAAAAAAGAATAGGAAACGAAGAAGACGAATAGGGC
GGCTAGGGTTTGTATTTGGTAAG