Detailed information on CNT30112113


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521211Ficus caricaSetaria italica26.8521.1793.158forward
CNT30640495Ficus caricaNymphaea colorata27.7814.8196.6760forward
CNT30224773Ficus caricaHordeum vulgare2522.0494.4454forward
CNT30395728Ficus caricaTriticum turgidum25.9312.594.6456forward
CNT30568742Ficus caricaActinidia chinensis20.3720.3790.9144forward
CNT30552909Ficus caricaOryza glaberrima26.3920.7392.9857forward
CNT30172487Ficus caricaTrifolium pratense30.5620.587.8866forward
CNT30665093Ficus caricaTriticum dicoccoides25.9317.7894.6456forward
CNT30447372Ficus caricaSaccharum spontaneum21.314.4795.6546forward
CNT30143339Ficus caricaLolium perenne26.8515.4394.8358forward
CNT301752Ficus caricaZea mays21.317.6297.8346forward
CNT30685689Ficus caricaTriticum urartu25.9321.7194.6456forward
CNT30361391Ficus caricaSorghum bicolor21.35.595.6546forward
CNT3024414Ficus caricaPopulus trichocarpa30.0921.3187.6965forward
CNT30115466Ficus caricaOryza nivara26.8520.9496.5558forward

Expression of CNT30112113

Peptides detected in this lncRNA

>peptide 1 (70 aa)
ENSVDGVHGDLVLGGVADETLGRPQVDPNSRTLTFSRHISLYQSSKNKLVFSNKKERKTMMIGEKFAVLCL

>peptide 2 (48 aa)
KTVLMGFMATWFLAESPMRRSVVPKSIPIAGPSPFPAIFRSTKAPKTN*

Sequence

>CNT30112113
CGAAAACAGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGAGTCGCCGATGAGACGCTCGGTCGTCCCCAAGTCGATCCCAATAGCCGGACCCTC
ACCTTTTCCCGCCATATTTCGCTCTACCAAAGCTCCAAAAACAAACTAGTATTCTCAAACAAGAAAGAAAGGAAAACGATGATGATTGGAGAGAAATTCG
CAGTGCTGTGTTTGTT