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Detailed information on CNT30224773


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Hordeum vulgareOryza sativa42.0446.492.23103forward
CNT30520761Hordeum vulgareSetaria italica52.655094.57129forward
CNT30640495Hordeum vulgareNymphaea colorata29.3917.7893.0672forward
CNT30535611Hordeum vulgareEucalyptus grandis45.714.4693.75112forward
CNT30295130Hordeum vulgareTriticum aestivum41.229.0691.09101reverse complement
CNT30395728Hordeum vulgareTriticum turgidum41.6322.7797.06102forward
CNT30568742Hordeum vulgareActinidia chinensis40.4145.8386.8799forward
CNT30552909Hordeum vulgareOryza glaberrima64.0857.0985.35157forward
CNT30172487Hordeum vulgareTrifolium pratense35.5127.0288.5187forward
CNT30440625Hordeum vulgareAegilops tauschii53.8846.9891.67132forward
CNT30665093Hordeum vulgareTriticum dicoccoides45.7135.5698.21112forward
CNT3079894Hordeum vulgareBrassica juncea30.226.5285.1474forward
CNT30449535Hordeum vulgareSaccharum spontaneum45.7127.1894.64112forward
CNT30143339Hordeum vulgareLolium perenne45.7129.7991.96112forward
CNT301752Hordeum vulgareZea mays45.7142.9188.39112forward
CNT30625786Hordeum vulgareDaucus carota29.88.5590.4173forward
CNT30685689Hordeum vulgareTriticum urartu100.8295.7491.5247forward
CNT30479018Hordeum vulgareArabidopsis halleri32.6524.7783.7580forward
CNT30367474Hordeum vulgareSorghum bicolor45.7139.4494.64112forward
CNT30369767Hordeum vulgareOryza glumipatula45.7143.5891.07112forward
CNT30578215Hordeum vulgareOryza barthii41.6314.2592.16102forward
CNT30115466Hordeum vulgareOryza nivara36.3332.1393.2689forward
CNT30112113Hordeum vulgareFicus carica22.042594.4454forward

Expression of CNT30224773

Peptides detected in this lncRNA

>peptide 1 (59 aa)
VDGVHGDLVLGGIADEALRVGEGDVRGRGAVALVDADGRPLALGRRHGSRSAEKEAKLS*

>peptide 2 (57 aa)
LMGFMATWFLAASPMRRSESVKATYEGVVRLPWSMPMAGPSPLVGAMALDRPRRKLS*

Sequence

>CNT30224773
GTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCGCCGATGAGGCGCTCCGAGTCGGTGAAGGCGACGTACGAGGGCGTGGTGCGGTTGCCCTGG
TCGATGCCGATGGCCGGCCCCTCGCCCTTGGTCGGCGCCATGGCTCTAGATCGGCCGAGAAGGAAGCTAAGCTAAGCTAGGGTTAGGGTTTGTCGAGCCT
TTGCGCAGCTGCTGGCGGCGGCTGCGGACGGACTCGGGAGAGGAG