Detailed information on CNT30491218


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521211Olea europaeaSetaria italica8.5621.5389.8359forward
CNT30568742Olea europaeaActinidia chinensis9.4330.0987.6965forward
CNT3079894Olea europaeaBrassica juncea12.0529.7585.5483forward
CNT30447372Olea europaeaSaccharum spontaneum10.8923.5885.3375forward
CNT301752Olea europaeaZea mays10.327.287.3271forward
CNT30479018Olea europaeaArabidopsis halleri10.7422.9187.8474forward
CNT30115466Olea europaeaOryza nivara9.8724.5589.7168forward

Expression of CNT30491218

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVHFGVSSLHWRCPSPTMNKKQKLIEIHARILSSTC*

>peptide 2 (60 aa)
IIIIINVYNKKGHRGKIIIYENKGQIITNLLCTEVHTFFLAAKWCILVFRVSIGDAHHQQ*

Sequence

>CNT30491218
AATAATAATAATAATAAATGTTTATAATAAAAAAGGGCACAGGGGAAAAATTATAATATACGAAAATAAAGGGCAAATTATTACAAATTTACTTTGTACC
GAGGTTCACACCTTTTTTTTGGCTGCAAAATGGTGCATTTTGGTGTTTCGAGTCTCCATTGGAGATGCCCATCACCAACAATGAATAAAAAACAAAAGCT
TATAGAGATTCATGCAAGAATTCTTTCATCCACTTGTTGAAGTCTTATTTAGTTATGTTCAAAACTAGATCAATGGAATGAAGAAAAAAATGCAGGACAA
ACCACATGTATGATATAATTGTAAGCACAAACTTCAATAATTTTAAATCATTGAAGGACAAAGCAAACTAGATCTATACTGTGAGCTCGAGCAACTAAGC
ACATATCTTGTACAAGCCATCGTCACCAAGTTAAGGAAGCATTAACAGTGATTAATAAATAATAGATCTACAATATAAAAAGCATAAAAGTAAATACATT
CAAACGTTTTCAATCACAGATCTAGCAAAATAAGACGAATGGAGCTAAATAAACTCAGATATATATATATATAAACATTAAAAAGAATAGATCTTACCAA
ATACAGTGTTCACCGGGTTCATGGCAACCTGGTTCTTAGCGGCGTCACCGATTAGCCGCTCGGAATCGGTGAAAGCCACATAAGAAGGC