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Detailed information on CNT30447372


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640495Saccharum spontaneumNymphaea colorata66.6752.3585.85212forward
CNT30491218Saccharum spontaneumOlea europaea23.5810.8985.3375forward
CNT30569551Saccharum spontaneumActinidia chinensis61.3219.3586.67195forward
CNT30172487Saccharum spontaneumTrifolium pratense65.7264.9182.78209forward
CNT3079894Saccharum spontaneumBrassica juncea58.1866.3181.62185forward
CNT301752Saccharum spontaneumZea mays79.2596.5594.05252forward
CNT30479018Saccharum spontaneumArabidopsis halleri45.9145.281.51146forward
CNT30361391Saccharum spontaneumSorghum bicolor98.1137.2893.91312forward
CNT3024414Saccharum spontaneumPopulus trichocarpa65.7268.5281.34209forward
CNT30115466Saccharum spontaneumOryza nivara30.535.0294.8597forward
CNT30112113Saccharum spontaneumFicus carica14.4721.395.6546forward

Expression of CNT30447372

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPIAGPSPFPAMERRCRREYRGEGGSLLDSPGQRVRGGGIEEERRNR

>peptide 2 (53 aa)
KTVLMGFMATWFLAASPTSLSESVNATYEGVVRLPWSLAMISTRSCCHTPTHE*

>peptide 3 (98 aa)
DGVDGVHGDLVLGRVADEPLGVGERDIRRRCAVALVVGDDLDTVMLPHPDARVGRAEVDADRRPVSLSGHGETLSSRVSGRGGISTGLAWSARTWWRN*

Sequence

>CNT30447372
AAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCCGCGTCGCCGACGAGCCTCTCGGAGTCGGTGAACGCGACATACGAAGGCGTTGTGCGGT
TGCCCTGGTCGTTGGCGATGATCTCGACACGGTCATGCTGCCACACCCCGACGCACGAGTAGGTCGTGCCGAGGTCGATGCCGATCGCCGGCCCGTCTCC
CTTTCCGGCCATGGAGAGACGCTGTCGTCGAGAGTATCGGGGAGAGGGGGGATCTCTACTGGACTCGCCTGGTCAGCGCGTACGTGGTGGAGGAATTGAG
GAGGAACGGAGGAATCGG