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Detailed information on CNT30143339


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Lolium perenneOryza sativa29.2649.5591.82110forward
CNT30520761Lolium perenneSetaria italica28.4641.4791.59107forward
CNT30640495Lolium perenneNymphaea colorata43.6240.4985.98164forward
CNT30535611Lolium perenneEucalyptus grandis45.486.892.4171forward
CNT30295130Lolium perenneTriticum aestivum29.529.9690.99111reverse complement
CNT30224773Lolium perenneHordeum vulgare29.7945.7191.96112forward
CNT30395728Lolium perenneTriticum turgidum35.1129.4693.18132forward
CNT30569551Lolium perenneActinidia chinensis45.4816.9685.38171forward
CNT30552909Lolium perenneOryza glaberrima27.9338.1890.48105forward
CNT30172487Lolium perenneTrifolium pratense44.1551.5584.94166forward
CNT30440625Lolium perenneAegilops tauschii28.9938.7990.83109forward
CNT30665093Lolium perenneTriticum dicoccoides44.1552.793.37166forward
CNT3079894Lolium perenneBrassica juncea45.4861.2982.46171forward
CNT30449535Lolium perenneSaccharum spontaneum44.1540.2991.57166forward
CNT301752Lolium perenneZea mays44.6864.3789.29168forward
CNT30625786Lolium perenneDaucus carota28.9912.7688.99109forward
CNT30685689Lolium perenneTriticum urartu26.8639.1594.06101forward
CNT30361391Lolium perenneSorghum bicolor43.6219.5990.85164forward
CNT30369767Lolium perenneOryza glumipatula35.3751.7592.48133forward
CNT3024414Lolium perennePopulus trichocarpa42.8252.7981.99161forward
CNT30578215Lolium perenneOryza barthii31.1216.3490.6117forward
CNT30115466Lolium perenneOryza nivara27.9337.9194.29105forward
CNT30112113Lolium perenneFicus carica15.4326.8594.8358forward

Expression of CNT30143339

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MGLRTEDGVDGVHGDLVLGGVADEALGVGEADIGGRGAVALIVGDDLDAIMLPDADAGVGRKRIAGLVGRSGSWIGARV*

>peptide 2 (45 aa)
RKQSITEKQGKIRWGYVPKTVLMGFMATWFLAASPMRRSESVKPT*

Sequence

>CNT30143339
TACGAAAGCAGAGCATAACAGAGAAACAGGGTAAGATCAGATGGGGTTACGTACCGAAGACGGTGTTGATGGGGTTCATGGCGACTTGGTTCTTGGCGGC
GTCGCCGATGAGGCGCTCGGAGTCGGTGAAGCCGACATAGGAGGGCGTGGTGCGGTTGCCCTGATCGTTGGCGATGATCTCGACGCGATCATGCTGCCAG
ACGCCGACGCAGGAGTAGGTCGGAAGAGAATTGCGGGATTGGTTGGTCGATCTGGATCTTGGATCGGAGCGCGCGTGTAGGAACAGAATAGGTGTACGAG
GTGGAGGGGCGATAGGGGGTTGGATTTTAAAGGCTGTGGTGCCGCGACCACGGAGGGGTTCTAGAAAGTTCCTAGG