Detailed information on CNT30672861


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 2e-54

BLAST vs NONCODE:
NONSLYT003545, E-value = 3e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30367748Setaria viridisSorghum bicolor59.69193.5354forward
CNT30149356Setaria viridisBrachypodium distachyon56.7314.4493.47337forward
CNT30576528Setaria viridisOryza barthii60.6153.8192.5360forward
CNT30496859Setaria viridisDigitaria exilis52.5350.992.95312forward

Expression of CNT30672861

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSCSSASVGFWPRERITVPSSLVVMQPARGKRNQTYD*

>peptide 2 (53 aa)
PTTTRHYHLHDTDTYSKGHDKLQLVILITVQFGQTYFMGTAPHLAIMTLTNSS*

>peptide 3 (80 aa)
MTWRSSAAEMKPFWSLSKTRKASLSSSSESVSFIFLAISINLVDHVLQLCFSRVLAKGAHHSSQLLGSDATCQGKKKPNL*

>peptide 4 (35 aa)
MISTQKHAMFSLIRIYKVVKVHKHSRLDLKTKYYIT

Sequence

>CNT30672861
CCGACAACTACTCGACATTACCACCTGCATGATACTGATACGTACTCAAAGGGACATGACAAACTACAGCTTGTGATCCTGATAACAGTTCAATTTGGAC
AGACTTATTTCATGGGGACCGCTCCTCACTTGGCCATCATGACCTTGACGAACTCCTCGTAGTTGATCTGGCCGTCGCCATCCACGTCAGCCTCGCGGAT
CATCTCATCGACTTCCTCATCGGTCAGCTTCTCACCAAGGTTGGTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTCTGGTCCTTGTCGAAG
ACGCGGAAGGCCTCCTTGAGCTCCTCCTCGGAATCAGTGTCCTTCATCTTCCTTGCCATCAGCATCAACCTCGTTGATCATGTCCTGCAGCTCTGCTTCA
GTAGGGTTCTGGCCAAGGGAGCGCATCACAGTTCCCAGCTCCTTGGTAGTGATGCAACCTGCCAGGGGAAAAAGAAACCAAACTTATGATTAGTACTCAA
AAACATGCAATGTTCTCATTAATAAGGATTTATAAAGTTGTAAAAGTCCATAAACATAGCCGGTTAGATTTAAAGACCAAATACTACATAACTG