Detailed information on CNT30532263


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071729Eucalyptus grandisQuercus suber20.9447.585.71133reverse complement
CNT30704690Eucalyptus grandisPrunus avium21.576.7480.29137reverse complement

Expression of CNT30532263

Peptides detected in this lncRNA

>peptide 1 (49 aa)
FLPIFFVTFGDHPWPPTPYAQPGSPWSITTGSLQILLDRHQTHLQISNR*

>peptide 2 (57 aa)
LSFPSSSLPLEITHGLRRHTRNLGHHGPSPPDLFRYFLTGIRLTSRSLTGSFRGLGR*

>peptide 3 (37 aa)
FPSHLLRYLWRSPMASDAIRATWVTMVHHHRISSDTS*

>peptide 4 (31 aa)
MTTRNNSGNRRLKFPSLSQGTSVKSNLAEEPK

>peptide 5 (40 aa)
MWQMAEAKTFVFQAEINYLLSLITNTFCNNKEFLRELIHN*

>peptide 6 (39 aa)
MESLQAGADVSMIGKFDVEFYSAYLVTEKVIVTIKHNDD*

Sequence

>CNT30532263
CTTTCCTTCCCATCTTCTTCGTTACCTTTGGAGATCACCCATGGCCTCCGACGCCATACGCGCAACCTGGGTCACCATGGTCCATCACCACCGGATCTCT
TCAGATACTTCTTGACCGGCATCAGACTCACCTCCAGATCTCTAACAGGTAGCTTCCGGGGATTAGGTCGTTGAAGTGCAACTGGCGAGCTTTCAACCTC
CTTAACACCTTTGTGCACGAGATCCTTACCAGCCTTTCTCAGTCTTCAAGGATGTGGCAGATGGCCGAAGCAAAGACCTTCGTGTTCCAGGCAGAGATCA
ACTATCTCCTAAGCTTGATTACCAACACTTTCTGCAACAACAAGGAGTTCCTTCGCGAACTAATCCACAACTGATCTCATCGGATCTTGTGAGTAACCTG
GGATCGCAAGGCCTGGGACCAAGGAATATATGGAATCATTGCAAGCCGGTGCTGATGTTAGCATGATTGGAAAATTTGATGTTGAGTTTTACTCAGCTTA
CCTCGTGACTGAGAAAGTTATTGTGACCATTAAGCACAATGACGACTAGAAATAATTCTGGGAATCGCAGGCTAAAGTTTCCTTCACTCTCACAAGGGAC
GTCAGTAAAGAGCAACTTGGCAGAGGAACCAAAGT