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Detailed information on CNT30675843


BLAST search results

BLAST vs Swiss-Prot:
sp|P55737|HS902_ARATH, E-value = 2e-47

BLAST vs NONCODE:
NONBNAT003938, E-value = 7e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Setaria viridisOryza sativa49.4151.8789.9208forward
CNT30378101Setaria viridisArabidopsis thaliana33.9716.2189.51143forward
CNT3019970Setaria viridisCitrullus lanatus19.4826.9786.5982forward
CNT3071729Setaria viridisQuercus suber29.6944.6484.8125forward
CNT30381504Setaria viridisManihot esculenta36.8218.0990.97155forward
CNT30402735Setaria viridisBeta vulgaris58.6718.1485.43247forward
CNT30631057Setaria viridisVigna unguiculata35.3917.5187.92149forward
CNT30711421Setaria viridisGlycine max28.2741.4689.08119forward
CNT30158908Setaria viridisPistacia vera37.299.6186.62157forward
CNT30305074Setaria viridisTriticum aestivum34.6823.2994.52146forward
CNT30560521Setaria viridisActinidia chinensis36.8221.5688.39155forward
CNT30554909Setaria viridisOryza glaberrima53.6858.787.61226forward
CNT3013256Setaria viridisZea mays21.3822.9693.3390forward
CNT30652736Setaria viridisRosa chinensis33.2524.1887.86140forward
CNT30481150Setaria viridisChara braunii24.77.3689.42104forward
CNT30418103Setaria viridisPapaver somniferum49.4153.3384.13208forward
CNT30103468Setaria viridisOryza rufipogon53.6843.2188.05226forward
CNT30724231Setaria viridisLupinus angustifolius16.6328.239070forward

Expression of CNT30675843

Peptides detected in this lncRNA

>peptide 1 (69 aa)
QDFIALLLQLLKEGGVLHSLLALTSDVVDVALALLHPCHIVLEASQLITALGRGSSWYPCQGSPQRYHV*

Sequence

>CNT30675843
ACAGGACTTCATAGCCCTTCTTCTTCAGCTTCTCAAGGAAGGGGGAGTTCTCCACAGCCTTCTTGCTCTCACCAGTGATGTAGTAGATGTCGCTCTGGCC
CTCCTTCATCCTTGTCACATAGTCCTTGAGGCTAGTCAGCTCATCACCGCTCTTGGTAGAGGATCATCTTGGTACCCCTGCCAAGGGTCTCCCCAGAGGT
ATCACGTGTGACGGTGAAGGATCCACCAGCCTGAGACTCCCACACGTACTGCTCATCGTCGTTGTGCTTGGTGGTCACAACAACTCTCTCAGCAACAAGG
TAGGCAGAGTAGAAACCAACTCCAAACTGACCGATCATAGACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTTCCTGACCGTGCAATGG
TCGAAGGGGGCCCTCTTGGGT