Detailed information on CNT3098657


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001022, E-value = 4e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537309Solanum tuberosumEucalyptus grandis12.9922.6985.5376reverse complement
CNT3071729Solanum tuberosumQuercus suber45.1394.2984.47264forward
CNT30712340Solanum tuberosumGlycine max24.4424.8793.01143forward
CNT30158908Solanum tuberosumPistacia vera32.8211.7583.85192forward

Expression of CNT3098657

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MGFCLFTNDHSLETSLIFFFFFSSFSFSSSTSSTFPSSSFFSSSSSSSEISFSMVLEPSLFKVFKLVLLEEEGNFGTSAKVLTRCISCNSE*

>peptide 2 (51 aa)
MNHQLEIPKHIVHHHCALSSQQPFQRPSKQSRNQHQIAQSCLHQHQQQWPP*

>peptide 3 (47 aa)
QLTLNREVLDSQMLFPIICQALVECSILLFCDLLRLPHPYGLLLIHQ*

Sequence

>CNT3098657
CCAGCTGACCCTCAACAGAGAAGTGCTTGACAGCCAAATGCTCTTCCCAATCATTTGTCAGGCTCTTGTAGAATGCAGCATACTCCTCTTTTGTGATCTC
CTCAGGCTTCCTCATCCATATGGGCTTCTGCTTATTCACCAATGACCACTCATTAGAGACTTCCTTAATTTTCTTCTTTTTCTTCTCTTCCTTCTCCTTT
TCTTCATCAACCTCCTCTACCTTTCCTTCCTCATCTTTCTTCTCCTCTTCGTCCTCATCATCAGAGATTTCCTTTTCTATGGTCCTTGAGCCTTCGCTCT
TCAAGGTATTCAAGTTGGTCCTCCTTGAGGAAGAGGGTAATTTTGGTACCTCTGCCAAGGTCCTCACCAGATGTATCTCTTGCAACAGTGAATGAACCAC
CAGCTTGAGATTCCCAAACATATTGTTCATCATCATTGTGCTTTGTCGTCACAACAACCCTTTCAGCGACCAAGTAAGCAGAGTAGAAACCAACACCAAA
TTGCCCAATCATGCTTACATCAGCACCAGCAGCAATGGCCTCCATAAATTCCTTGGTGCCAGACCTAGCAATTGTACCAAGGTTG