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Detailed information on CNT30572261


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-55

BLAST vs NONCODE:
NONVVIT000384, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315988Vitis viniferaCorylus avellana26.8952.3888.64220forward
CNT30514140Vitis viniferaJuglans regia23.1118.989.95189forward
CNT30702989Vitis viniferaQuercus lobata30.8126.3982.94252forward
CNT30269346Vitis viniferaChenopodium quinoa24.6925.9386.14202forward
CNT30380492Vitis viniferaManihot esculenta28.3631.6986.21232forward
CNT30504486Vitis viniferaNicotiana attenuata28.7346.6387.23235forward
CNT30709036Vitis viniferaGlycine max28.6136.4585.9234forward
CNT3046618Vitis viniferaPrunus dulcis27.8727.2787.28228forward
CNT30171043Vitis viniferaTrifolium pratense26.8935.4884.09220forward
CNT30610069Vitis viniferaGossypium raimondii28.7353.2985.96235forward
CNT30355896Vitis viniferaLactuca sativa29.140.4886.55238forward
CNT30153357Vitis viniferaPrunus persica27.8712.9186.4228forward
CNT30417231Vitis viniferaPapaver somniferum21.2723.3986.21174forward
CNT30645477Vitis viniferaCannabis sativa26.1656.1784.11214forward

Expression of CNT30572261

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MLTPLSIDQFLISCNKTSQIFLINQTNTILSMDQFHLPGTKFVAYAQALLLTGSARWSAKFSSGPFPVTIA*

>peptide 2 (35 aa)
MENMASLPFLISFTLSSAKASGSSASPSGSKLPPG*

Sequence

>CNT30572261
TGCAATTAATTCTAATTAGGAATATATTTCAAAAGGCGAAAAAAATTAATCACTAGCATAATAAGAGAACAATTTGAAAATTTTTCACATTAACTAATTA
AGCTCCAAATGCTCACACCATTGTCCATTGATCAGTTTCTCATCAGTTGTAACAAGACCTCACAAATATTTCTCATCAACCAAACAAATACTATTCTGTC
CATGGATCAATTTCACTTGCCAGGAACAAAGTTTGTGGCATATGCCCAAGCATTGTTGTTAACGGGGTCGGCAAGGTGGTCAGCCAAGTTCTCCAGTGGA
CCCTTTCCGGTGACAATAGCCTGAACAAAGAAGCCAAACATGGAAAACATGGCCAGCCTCCCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGCCT
CAGGGTCATCAGCTAGCCCTAGTGGATCAAAGCTTCCACCGGGGTAAAGGGGATCGGTGACCTCCCCAAGTGTGGATGACCTCAAGCTCACGATTCTTGG
CGAAGGTCTCCGGATCAGCTGAGAGGCCTGCAGTGTCCCAGCCATAGTCACCAGGGAACTCACCAGTCAAGTAGGATGGTGGCTCACCAGAGAAGGGCCC
CAAGTACTTGACTCGGTCAGGGCCATACCAGGGGCTTCCTGAAGAAACTGCTTTAGATTTTGCCACAGATTTTCTCATTGTGACTCTTCCTTGATCACCA
GCAAGAAGCTCAGTGACATTGGGTGCAAGCTTCACAGCTTGTCCAGCAAGGGAAGGAGAAGAGAGAGCCATTGTTGATGAAGTGGCCATAGATGTGTAGA
GTGAATATTGGTTTTCTG