Detailed information on CNT30709643


BLAST search results

BLAST vs Swiss-Prot:
sp|P09756|CB23_SOYBN, E-value = 6e-165

BLAST vs NONCODE:
NONMTRT001605, E-value = 6e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534416Glycine maxEucalyptus grandis51.6144.1486.52497forward
CNT30702989Glycine maxQuercus lobata44.9645.3482.91433forward
CNT3091731Glycine maxSolanum tuberosum44.1382.0586.59425forward
CNT30562270Glycine maxActinidia chinensis46.1162.1885.81444forward
CNT30145117Glycine maxMedicago truncatula42.6844.6787.59411forward
CNT30310534Glycine maxCamelina sativa51.1941.6482.56493forward
CNT3079822Glycine maxBrassica juncea51.8251.582.16499forward
CNT30137663Glycine maxLolium perenne51.471.5383.43495forward
CNT30609649Glycine maxGossypium raimondii43.8255.7585.55422forward
CNT30356707Glycine maxLactuca sativa37.5931.1386.46362forward

Expression of CNT30709643

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGPASRPCQPRMGMREPWKKLLPFFNSRMSFALCFVL*

>peptide 2 (34 aa)
MLTLPTSGADGPSFTALPAKDGDERAMEEAAAIF*

>peptide 3 (32 aa)
MANRPFLSSFTLSSAKASGSSARPNGSKLPPG*

Sequence

>CNT30709643
GGCGTCAAAAGCTTAGAAGTATAAAATGAGAGAACAAATTGACACTTGAGTTTTGTAAAAAGCAAGTAACATTAAGTTGGATTCGGATACACAAGATAAT
TCACATTATCTGAAGTACTTCACCAAACACAAATCTAAAAACTCTCAAAAGTCATTTCGTTCTTTGACGCTCACTTTCCGGGGACGAAGTTGGTGGCATA
GGCCCAGGCGTTGTTGTTGACAGGGTCAGCAAGGTGATCGGCGAGGTTCTCCAATGGACCCTTTCCGGTGACAATGGCCTGAACAAAGAAGCCAAACATA
GAGAACATGGCCAATCGTCCGTTCTTGAGTTCCTTCACCTTAAGCTCAGCAAAAGCCTCTGGGTCATCAGCAAGGCCCAATGGGTCGAAGCTGCCACCTG
GGTAGATTGGGTCAGTGACCTCACCGAGGGGGCCACCAGCAATACGGTAACCTTCAACGGCACCCATTAGGATAACTTGTGTGGCCCAGATGGCGAGGAT
GCTCTGGGCGTGGATCAGGCTTGGGTTGCCCAAGTAGTCGAGCCCACCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCTTCTCCGAACTTC
ACCCCGTTGCGGGACAGCAACTCCGGGAAGACGCAGCCCAAGGCTCCGAGCATGGCCCACCTGGAGTTTCTGGTGTCCCAGCCGTAGTCGCCTGGGAACT
CACCGGTTAGGTAGGACGGGGGCTCGCCAGAGAATGGGCCCAAGTACTTGACTCGGTCTGGGCCGTACCATGGGCTTCCTGAGGAGACCTGCTTGGTGAC
GGTCTTCCTCATGCTCACCCTTCCCACTTCTGGGGCTGATGGGCCCAGCTTCACGGCCTTGCCAGCCAAGGATGGGGATGAGAGAGCCATGGAAGAAGCT
GCTGCCATTTTTTAACTCAAGGATGAGCTTTGCTTTGTGCTTTGTGTTATGAGTGTTTTGAAG