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Detailed information on CNT30380492


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315988Manihot esculentaCorylus avellana36.263.187.92265forward
CNT30548768Manihot esculentaIpomoea triloba36.4871.9784.64267forward
CNT30702989Manihot esculentaQuercus lobata35.7927.4383.97262forward
CNT30404043Manihot esculentaBeta vulgaris31.2820.7684.72229forward
CNT30629553Manihot esculentaVigna unguiculata34.8432.0883.92255forward
CNT30504486Manihot esculentaNicotiana attenuata36.4852.9886.89267forward
CNT30709036Manihot esculentaGlycine max34.2939.187.65251forward
CNT30562270Manihot esculentaActinidia chinensis36.237.1188.3265forward
CNT30538978Manihot esculentaBrassica napus27.1919.185.93199forward
CNT30235237Manihot esculentaBrassica oleracea31.6941.883.62232forward
CNT30173253Manihot esculentaTrifolium pratense34.5629.7384.58253forward
CNT30146159Manihot esculentaMedicago truncatula31.9737.585.47234forward
CNT30610069Manihot esculentaGossypium raimondii36.4860.5488.01267forward
CNT30623499Manihot esculentaDaucus carota32.2460.3683.47236forward
CNT30357114Manihot esculentaLactuca sativa36.228.9986.04265forward
CNT30417231Manihot esculentaPapaver somniferum28.6928.2383.81210forward
CNT30572261Manihot esculentaVitis vinifera31.6928.3686.21232forward
CNT3055166Manihot esculentaAmborella trichopoda33.7430.4983.81247forward
CNT30723175Manihot esculentaLupinus angustifolius31.0131.185.46227forward

Expression of CNT30380492

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MPLDHQPIPMGQSSHQGRLGLLPHRAVHREFASQVGWGLTREWTQVLNTVWTVPWASRGNSLAGSFPH*

>peptide 2 (29 aa)
MSSGAEGVSFTALPAREGEERAIVEAAIV*

Sequence

>CNT30380492
ACTGAGCACAAGAAGGTTAAAAAATTGGATTAAAAAACATTGACCATCCACTCAGACATATTACATTTTGTGCACCACCAGTCCATCTCACATTTTTTTT
CCCTTTGCTTTGGTAGGAAAATCACTCAAAATATTACAAGATTTCCCATTTACTTTCCAGGAACAAAGTTTGTGGCATAAGCCCAGGCATTGTTGTTGAC
AGGATCAGCAAGGTGGTCAGCCAAGTTCTCCAATGGTCCTTTTCCGGTCACAATGGCCTGAACAAAGAATCCAAACATAGAGAACATAGCCAACCTGCCA
TTCTTGATTTCCTTTACCTTCAGCTCAGCAAATGCCTCTGGATCATCAGCCAATCCCAATGGGTCAAAGCTCCCACCAGGGTAGATTGGGTCTGTTACCT
CACCGAGCGGTCCACCGGGAATTCGCCAGTCAAGTAGGATGGGGGCTCACCAGAGAATGGACCCAAGTACTTAACACGGTCTGGACCGTACCATGGGCTT
CCAGAGGAAACAGCCTTGCTGGCAGTTTTCCTCATTGAAAAACGGCCATTGCCCATGAGCTCAGGGGCAGAGGGGGTGAGCTTCACTGCCTTGCCGGCAA
GAGAAGGGGAGGAAAGGGCCATTGTTGAGGCTGCCATTGTTTAAAGGAGTGTGGGTTTGAATCCTCTGTATGTTGTTTGATTCAAGTGGTGAATTAGAGA
AGTGGATTTGGTGGGTATTTATAATGAGTTAA