Detailed information on CNT3015356


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070208Zea maysQuercus suber14.4525.189.0664forward
CNT30379183Zea maysManihot esculenta17.3827.1187.0177forward
CNT30479039Zea maysArabidopsis halleri17.8325.8287.3479reverse complement
CNT30361740Zea maysSorghum bicolor65.6995.4186.94291reverse complement

Expression of CNT3015356

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MAFAKAATTQLPTWNGRATDCSTRPGSKRHNWHPHHLIAPARVTSSR*

Sequence

>CNT3015356
ATCGAACGTATAGAGGACCAGTGCCTAGAGGCTCAAATAGCCTACATAATCGATTGACGATGGTTGTTACTTGACGCTGTTGGTTGGACAAATGGGCTGT
AGTGGCAAATGAGTAGGTATGCAAGACAAGCAAAAAAAACAAAAATGGTGGTCTGCTAGAAAGAGCACTTGGGCCTAGTGGGCCTAGAGTGCAGTGGCCC
GTTATCCTTCCACCGTTGGAAGCGAACGGTATTCGCTGCTCTGTGAAACCAGCCTCACGCATTGCCCGCCGCTCTAGAGAGAGGGACGCCATGGCCTTCG
CCAAAGCGGCCACAACCCAACTACCAACTTGGAACGGGCGGGCCACAGATTGCAGTACCAGGCCCGGGTCCAAGCGCCACAATTGGCATCCACACCACCT
TATTGCCCCCGCTCGGGTTACAAGCAGTCGCTAGCTGCTCGGC