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Detailed information on CNT30334668


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547454Cynara cardunculusIpomoea triloba11.7821.3487.1470forward
CNT30727389Cynara cardunculusCorchorus capsularis12.6333.488875forward
CNT3070208Cynara cardunculusQuercus suber13.9732.5585.5483reverse complement
CNT30379354Cynara cardunculusManihot esculenta10.4420.4690.3262forward
CNT3046253Cynara cardunculusPrunus dulcis18.5251.6483.64110reverse complement
CNT3086893Cynara cardunculusVigna radiata13.6426.6488.8981forward
CNT30172294Cynara cardunculusTrifolium pratense10.6122.5888.8963forward
CNT30215606Cynara cardunculusHelianthus annuus50.5198.3684.67300forward
CNT30128358Cynara cardunculusCorymbia citriodora11.7825.3688.5770reverse complement
CNT30356369Cynara cardunculusLactuca sativa50.671684.05301forward
CNT30154450Cynara cardunculusPrunus persica18.5236.0783.64110forward
CNT30175046Cynara cardunculusVigna angularis13.9727.2185.5483forward

Expression of CNT30334668

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVPKVEGKALGWLHRAAKTSPSKQWKDNRPVLPWPM*

Sequence

>CNT30334668
TTCAATAAAACCTCATTTTTGGTTTCATTTTCATGAATCTAAACACCATTCTTGACTCGATTTAGAGTTCTCAAAAACAAGCATACACAACCTAACCCTT
TCCATCTCAACTTCACTTATTGGTGCACCAGGGGAAGAATACGACGTATTTTGGGAGAAATCAGAGAAAAACKGAGCACAAAAGCTTTAATCTCAYTCCC
ACATCGAGACGGAGTAGATGAAACSGGCCTGTTTATAAACAACAAATGGAGTTGGATTGTCGCCGGGCTTGGTAACGCGAGCCTGTGACTCGTGTGAGGG
CWTTAAGATGGTTGAACTGTGATTGAGCCCAGATTGGTTGGGTTCGATGGTTGCAAAATCTGGCTTGCCCATTCCAAGTTTGGAGTTGGACCATGTGGGT
TAGACGAAGGCCTGGACTTCATGGTTCCTAAAGTAGAAGGCAAAGCGTTAGGCTGGCTTCACAGAGCTGCGAAAACCTCTCCCTCCAAACAGTGGAAGGA
TAACAGACCGGTGCTTCCTTGGCCCATGTAACCAGCTGGGCTCCTTCTGATGGACTCCCATCTTTTTAATCGATCAAATGTATTTTATGCAGGT