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Detailed information on CNT30406606


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547454Beta vulgarisIpomoea triloba24.2722.8786.6775forward
CNT30617951Beta vulgarisSesamum indicum24.928.1489.6177forward
CNT30272829Beta vulgarisChenopodium quinoa69.5870.0391.16215forward
CNT30727290Beta vulgarisCorchorus capsularis27.5127.8789.4185forward
CNT3070208Beta vulgarisQuercus suber28.4834.5188.6488reverse complement
CNT30525537Beta vulgarisPhaseolus vulgaris22.9823.2891.5571forward
CNT30200314Beta vulgarisPisum sativum20.3927.2788.8963reverse complement
CNT30506278Beta vulgarisNicotiana attenuata28.4829.0488.6488forward
CNT3046251Beta vulgarisPrunus dulcis36.8937.8785.96114forward
CNT30634223Beta vulgarisCapsicum annuum24.626.0388.1676reverse complement
CNT3096133Beta vulgarisSolanum tuberosum21.3621.7890.9166forward
CNT30561829Beta vulgarisActinidia chinensis28.4824.6588.6488forward
CNT30587521Beta vulgarisMusa acuminata25.2423.8587.1878forward
CNT3086859Beta vulgarisVigna radiata28.4829.1490.9188forward
CNT30538642Beta vulgarisBrassica napus21.3628.0992.4266forward
CNT30235726Beta vulgarisBrassica oleracea21.6821.991.0467forward
CNT30510805Beta vulgarisSolanum lycopersicum26.2126.5687.6581forward
CNT30261746Beta vulgarisBrassica rapa21.3628.0992.4266forward
CNT30647270Beta vulgarisRosa chinensis36.8937.1386.84114forward
CNT30625980Beta vulgarisDaucus carota25.5725.987.3479forward
CNT30154450Beta vulgarisPrunus persica39.8140.3386.18123forward
CNT30410045Beta vulgarisPapaver somniferum21.6822.6492.5467reverse complement
CNT3029804Beta vulgarisTheobroma cacao25.2425.4191.0378forward
CNT30120686Beta vulgarisCitrus clementina26.2126.9192.5981reverse complement
CNT3050501Beta vulgarisCucumis sativus21.3621.6490.9166forward

Expression of CNT30406606

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MEHDRGLLGRVYGWLNAGSPYPSWELAHVAWAKALSFMGPKVEGTA*

Sequence

>CNT30406606
GCTGAGCTAAGTAACGTGAGCTTGTAACCCATGTGGGGGCAACAAGGTGATGGAACATGATCGTGGCCTTCTGGGTCGGGTCTATGGTTGGCTGAATGCT
GGCTCGCCCTATCCAAGTTGGGAGTTGGCTCATGTGGCTTGGGCGAAGGCCTTAAGCTTCATGGGCCCTAAAGTGGAGGGTACTGCGTGAGGCTGGTTTC
ACAGAGCAACGAAAACCTCCCACTCTTGTCAGTGGAAGGATAACGGGCTAGTGCCTCCTTGGCCCATTAGTACCTAGTTGGCTGATATCTTAAATGGACC
ATCACTTTT