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Detailed information on CNT30505537


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Nicotiana attenuataCorylus avellana23.5320.3491.6772reverse complement
CNT30617951Nicotiana attenuataSesamum indicum40.5213.1183.87124forward
CNT30727745Nicotiana attenuataCorchorus capsularis23.225.0991.5571forward
CNT3070208Nicotiana attenuataQuercus suber23.5328.2488.8972reverse complement
CNT30538642Nicotiana attenuataBrassica napus25.8233.6287.3479forward
CNT30261746Nicotiana attenuataBrassica rapa25.8233.6287.3479forward
CNT30644641Nicotiana attenuataCannabis sativa30.0724.7390.2292forward
CNT3029804Nicotiana attenuataTheobroma cacao22.2222.1591.1868forward
CNT3026903Nicotiana attenuataPopulus trichocarpa31.3731.5887.596forward

Expression of CNT30505537

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MANAWPALSKHGVQSCGPNESMGFLTPRVGWTA*

Sequence

>CNT30505537
GCCGAGCCTGGTAACGTGGGCTTGTAACCTATGTAGGGGCAATAATGTGGTAGAATGTTAGGTTGATATCTTGAAGGCTGGGCTTCAAATGGCTAATGCT
TGGCCTGCCCTATCCAAGCATGGAGTTCAGTCATGTGGCCCAAACGAAAGTATGGGCTTCTTGACTCCTAGAGTGGGGTGGACTGCGTGAGGCTGGTTTC
ACAGAGCAACGAAGAACTCCCGCTCTATGCAGTGGAAGGATAACGGGCCGGTGCTATTCAAGTCCAACAAACACCTGATGGGCAACCTAATTAAACCATC
ACTTTT