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Detailed information on CNT30700605

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3070208	Quercus lobata	Quercus suber	47.61	93.73	94.14	239	forward
CNT30503674	Quercus lobata	Nicotiana attenuata	13.94	23.03	90	70	reverse complement
CNT30710185	Quercus lobata	Glycine max	13.35	22.04	88.06	67	reverse complement
CNT30634223	Quercus lobata	Capsicum annuum	17.73	30.48	85.39	89	forward
CNT3086893	Quercus lobata	Vigna radiata	16.73	27.63	88.1	84	reverse complement
CNT30541131	Quercus lobata	Brassica napus	14.34	23.38	88.89	72	reverse complement
CNT30236855	Quercus lobata	Brassica oleracea	14.34	23.3	88.89	72	reverse complement
CNT30171945	Quercus lobata	Trifolium pratense	31.47	58.96	82.28	158	forward
CNT3061108	Quercus lobata	Arabidopsis lyrata	11.16	24.45	92.86	56	forward
CNT3076575	Quercus lobata	Brassica juncea	14.34	22.93	88.89	72	reverse complement
CNT30263689	Quercus lobata	Brassica rapa	14.34	23.45	88.89	72	reverse complement
CNT30715024	Quercus lobata	Malus domestica golden	13.94	25.74	91.43	70	reverse complement
CNT30644641	Quercus lobata	Cannabis sativa	30.68	41.4	85.06	154	reverse complement
CNT30121042	Quercus lobata	Citrus clementina	21.12	35.22	85.85	106	forward
CNT30174899	Quercus lobata	Vigna angularis	15.14	26.57	86.84	76	reverse complement

Expression of CNT30700605

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MWASSTPARNPSTVESERSSLLCETSLTQYPLL*

>peptide 2 (70 aa)
RLCNPKSVMGFRSKISKEMLGTTQISKEMLGTTAKGFRSKISKQMSGTTTKKWWSKESNSTRQCGPVVVV*

Sequence

>CNT30700605
CAGACTTTGTAACCCCAAATCAGTCATGGGCTTTAGATCTAAAATATCCAAAGAAATGTTAGGGACAACCCAAATATCCAAAGAAATGTTAGGGACAACA
GCTAAGGGCTTCAGATCTAAAATATCCAAACAAATGTCAGGGACAACAACAAAAAAGTGGTGGTCTAAGGAGTCCAACTCGACCAGGCAATGTGGGCCAG
TAGTGGTGGTCTAAGGAGTCCAACTCGACCAGGTAATGTGGGCCAGTAGTACACCAGCCCGTAATCCTTCCACTGTTGAGAGCGAGAGGTCTTCGCTGCT
CTGTGAAACCAGCCTCACGCAGTACCCTCTACTTTAGGGACCATGTGATCCAGACCTTCGCCCAAATCACAAAGCCCATCTCTCAACTTGGAACGGGCGG
GCCAGGTAGTTGCACAAACAAACCCTGTCTGGTGAGCCGAACTATTATCCCACCACTCTAATGCCCCTGCACAGGTTACAAGTTGGCGCTACCCAACTCG
GC