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Detailed information on CNT30625551


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 1e-39

BLAST vs NONCODE:
NONCQUT001608, E-value = 5e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Daucus carotaCorylus avellana11.3932.1883.33186forward
CNT30512567Daucus carotaJuglans regia13.2951.9183.87217forward
CNT30616445Daucus carotaSesamum indicum4.6520.1690.7976forward
CNT30279728Daucus carotaChenopodium quinoa13.6630.0984.3223forward
CNT3020258Daucus carotaCitrullus lanatus12.1928.1981.41199forward
CNT30727207Daucus carotaCorchorus capsularis14.0222.4584.72229forward
CNT3069740Daucus carotaQuercus suber12.9823.486.32212forward
CNT30525466Daucus carotaPhaseolus vulgaris13.5374.4181.45221forward
CNT30712618Daucus carotaGlycine max12.835.7983.25209forward
CNT30633374Daucus carotaCapsicum annuum13.0424.8380.75213forward
CNT30235713Daucus carotaBrassica oleracea7.7824.885.04127forward
CNT30146094Daucus carotaMedicago truncatula12.1238.983.84198forward
CNT30313480Daucus carotaCamelina sativa11.1529.8981.87182forward
CNT30261182Daucus carotaBrassica rapa4.7224.6887.0177forward
CNT30605276Daucus carotaGossypium raimondii11.0245.5783.33180forward
CNT30648517Daucus carotaRosa chinensis12.840.9885.65209forward
CNT30430735Daucus carotaPapaver somniferum10.8429.681.92177forward
CNT30705711Daucus carotaPrunus avium8.7627.584.62143forward
CNT3026569Daucus carotaPopulus trichocarpa11.75082.2191forward
CNT3038822Daucus carotaCucumis melo12.846.9784.21209forward
CNT30725197Daucus carotaLupinus angustifolius11.5726.7785.71189forward

Expression of CNT30625551

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLHKQMYNIQQCFRLFISSSSLVSELRCL*

>peptide 2 (30 aa)
MLRQYFEDYWEGKPQIILAFHFARYVNLKR*

>peptide 3 (36 aa)
MSSLCMRPCTTVWCLYIRIQGLLDVPNVQTEKPKQI*

>peptide 4 (60 aa)
MEEAIVCLSYVTLRYEFTMHETLHNSLVSIYKDTRPPRCTKCTNRKTETNLSYWILWLMKA

Sequence

>CNT30625551
CAAAAGTTTATACAAAATGACATGACAATTAAGATGTAATATTTAATTGGTGTTATTAATACATATACCTATTCAAATCAAACCTTAGACATGCTCATTT
GTGAATGTTCTTTATCTAATTCTGATAAGGTAGTTAAGAGCATCTCAAAGAGACTCTTCATTTAGGCTCTTAACTTGAGATTTGAGCAGAATGAGGAAAA
AAGTTGCTCCAGACTCTTAGTGGTTCCTTAAATCACTAAAAGCCTCTTGTTTCTCTCTCCTCAAAGTTCAGAGCACCACATAGCTCTTAACTTAATTTTG
CACGATAAAAAATTCCTTCACTCCAATTCACGTTCACCTTTCCCTCTCGTTTTGTTTTATAATGGAGCCCAATATGAATAAAATATGAAATAGAGAATAG
ATATAGAGAGAGTATTGTTGAAGTTTACACTCTTAAATTTGTACTAAATTGCTTAGAATCATATTGTTTATATTATATTTAGCAGCCAACTAAGAGGCTC
TTTGGGATGCTCCGACAATACTTCGAGGATTATTGGGAGGGAAAACCCCAAATTATACTAGCATTTCATTTTGCTAGATACGTGAACTTGAAACGGTGAA
GGGCAACATAGTATTATTCATGATACTCATGATCTCATATTGCCATTATAAAATCTGCGTACTATTTTACAAAGGTGAGTGAGTACTCTAGAGTGCAATC
TGCGGAAATTGGTAGCTAGAGTAGAAACTCGTAGTCTAATTTAAAGAGGGGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGACGTACATTGTCGAA
TCCGATAATTCGGATGAATGACTGCGGGTATGTCTGCTTAGCCTCCTCCAACTCCTTCAAAACCTGAGAAGAGTCGGTGCATCCAAACATGGGTAGCTTC
CACATTGTCCAGTATCGTCCATCATAGTACCCTGGTGACCGGTGGTTCTCACGGTACACAAAACCATGCTACACAAACAAATGTATAATATTCAGCAATG
TTTCAGATTATTTATTTCATCATCAAGTTTAGTAAGCGAGCTGCGGTGTCTTTAAATTTAGCTGATATATATTAAAAAATTTACTTTGTGTAGATTTTAT
TCAGCTTGGGGTTTTGGTTAAAGCCTCAGTACATGGAGGAAGGGTAATTAAGGTGGGCACACCTCGTCTCACCCTTCTTCCGAATGTGAAATTTGGATTT
TAGAAAGAAACCGTGATTATTTAAGAGGTTAAGAAAAAGACCTCCAACTCGAATTCCAAGCAAGGAACCCATCCCATGCGAAGAAGGTAGTCGATTTCCT
TAGCAAGAGATTCGGGTGAAAGTGGTGGAAGAGAGGTGATGGTGTTAGCTTGTTTGGTCACAGGGAACGCGGCGTTTGACTTGAGACCAGTGAAGGGTGC
AACCATGTTGGCTTGAGTTGGGGTGGCCAGGCTTACGGCACAAGAAATCATGGAAGAAGCCATCGTCTGTCTATCTTATGTTACGCTAAGATATGAGTTC
ACTATGCATGAGACCTTGCACAACAGTTTGGTGTCTATATATAAGGATACAAGGCCTCCTAGATGTACCAAATGTACAAACAGAAAAACCGAAACAAATC
TGAGCTATTGGATTCTGTGGTTGATGAAAGCGT