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Detailed information on CNT30727207


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 4e-46

BLAST vs NONCODE:
NONCQUT001608, E-value = 7e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091618Corchorus capsularisSolanum tuberosum22.1619.5381.86226forward
CNT30625551Corchorus capsularisDaucus carota22.4514.0284.72229forward
CNT30356658Corchorus capsularisLactuca sativa20.6912.8381.99211forward

Expression of CNT30727207

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MENDLQFEFQARNPSRAEKVVYFLSQLHGGEIREV*

>peptide 2 (53 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQRKKKRV*

>peptide 3 (37 aa)
MRESRTSSSQVVACAGEARLTTVADDIIAEAIASTPY*

>peptide 4 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

Sequence

>CNT30727207
AACATATATAGTTTACATTGAGAAATCACACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATA
TATAGTTGGAGAACTTAAAATACAGAGAAAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGG
AAATCAAAAACCCAGAATTCAAAAAAACAAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGC
CGAATCCCTACAATGTGGGGAAAACAACTCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTT
GTTGTCGAATCCGATGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATG
GGAAGTTTCCACATGGTCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTC
AATATCAGCAAAAAACAGAGAAAAAAAAAGAGAGTGTAAATTAAACTAAGTTTAGTTATAGAGAGAGCATGGAAAATGGAAAATGACCTCCAATTCGAAT
TCCAAGCAAGGAATCCATCCAGAGCGGAGAAGGTAGTCTACTTCCTTAGCCAATTGCACGGGGGTGAGATCCGGGAGGTATGAGAGAGTCTCGAACTTCT
TCTTCCCAAGTGGTGGCCTGTGCCGGGGAGGCACGGTTAACAACGGTGGCGGATGACATCATTGCGGAAGCCATTGCTAGTACTCCTTACTAGTAATGAC
TATGTACTAATATAATCAGTACTTAATAGTGATTCTGCCCAACTGCCAATACCCCCTATATATAATGAAAAACTTTGGCCATCTCATATCCTATGGTTAC
AACATTTTGAGCCTAATTTC