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Detailed information on CNT30317063


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96542|RBS_BETPN, E-value = 2e-38

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Corylus avellanaEucalyptus grandis45.552.682.89263forward
CNT30512567Corylus avellanaJuglans regia32.1844.588.71186forward
CNT30372132Corylus avellanaArabidopsis thaliana31.4928.1783.52182forward
CNT30268101Corylus avellanaChenopodium quinoa32.8719.7183.16190forward
CNT30727206Corylus avellanaCorchorus capsularis32.018.0389.19185forward
CNT3069740Corylus avellanaQuercus suber32.3520.6484.49187forward
CNT30402284Corylus avellanaBeta vulgaris10.2126.9491.5359forward
CNT30525466Corylus avellanaPhaseolus vulgaris31.4961.2882.97182forward
CNT30629734Corylus avellanaVigna unguiculata31.1420.281.11180forward
CNT30710856Corylus avellanaGlycine max31.4917.7283.52182forward
CNT3091655Corylus avellanaSolanum tuberosum32.0130.5881.08185forward
CNT30124778Corylus avellanaPhyscomitrium patens16.4432.0986.3295forward
CNT30565204Corylus avellanaActinidia chinensis29.9328.4180.35173forward
CNT30543822Corylus avellanaBrassica napus31.4962.7680.22182forward
CNT30235546Corylus avellanaBrassica oleracea31.4921.9380.22182forward
CNT30310235Corylus avellanaCamelina sativa31.4921.3682.97182forward
CNT3059910Corylus avellanaArabidopsis lyrata31.4934.7382.97182forward
CNT3074948Corylus avellanaBrassica juncea30.9725.7681.56179forward
CNT30261376Corylus avellanaBrassica rapa31.4945.580.77182forward
CNT30613234Corylus avellanaArabis alpina31.4931.9380.22182forward
CNT30605276Corylus avellanaGossypium raimondii31.3145.8286.74181forward
CNT30648517Corylus avellanaRosa chinensis32.0136.2783.78185forward
CNT30625551Corylus avellanaDaucus carota32.1811.3983.33186forward
CNT30479552Corylus avellanaArabidopsis halleri31.4931.7183.52182forward
CNT30620550Corylus avellanaCajanus cajan31.4915.1985.16182forward
CNT30356658Corylus avellanaLactuca sativa29.7610.4681.4172forward
CNT30705707Corylus avellanaPrunus avium32.1816.584.41186forward
CNT3038822Corylus avellanaCucumis melo32.1841.882.26186forward
CNT30335392Corylus avellanaCynara cardunculus24.3917.383.69141forward
CNT30725197Corylus avellanaLupinus angustifolius32.0126.281.08185forward

Expression of CNT30317063

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKSLKMPSMFLSFLQLSSKFLARAENLLLQLRIYKGGRLGISYPVVRD*

>peptide 2 (71 aa)
MMKSLVAFSRLVGNETDDLHLALVVESNDSDEGLGIFLLALLKLLQHLGRVVAPKHRQLPHGPVPPIIVSW*

>peptide 3 (54 aa)
MKLMICTWRLLSNPMIRMKAWGYSFLHSSSSFNTWEESLHPNIGSFHMVQYRPS*

Sequence

>CNT30317063
AGATACAAATTTAAACAGAGCACCGACCCCCCAAACGGGCAGATGTAGAGATTAAAAGCAAATCATAATTAACAGTTTTGAAAATGATGAAATCATTAGT
AGCCTTTAGCAGGCTTGTAGGCAATGAAACTGATGATCTGCACTTGGCGCTTGTTGTCGAATCCAATGATTCGGATGAAGGCCTGGGGATATTCCTTCTT
GCACTCCTCAAGCTCCTTCAACACCTGGGAAGAGTCGTTGCACCCAAACATCGGCAGCTTCCACATGGTCCAGTACCGCCCATCATAGTATCCTGGTAAT
GTCGTTGGTCTTCTGGGTAACCGGGAAAGCTGAGGTGGACTTGAGGCCGGTGAAGGGTGCAACCATGCTGGCTTGAGCCGGGGTGGCACGGTTGACGGCG
GCAACGGTGGCCGATGAAATCATTGAAGATGCCATCGATGTTTCTTTCTTTCTTACAACTCTCCTCAAAATTCCTTGCTAGAGCTGAAAACCTCCTTCTC
CAACTTCGTATATATAAAGGTGGAAGACTGGGTATTTCGTATCCTGTGGTCAGAGATTGATGGGCTTGATCTCAAACA