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Detailed information on CNT30648517


BLAST search results

BLAST vs Swiss-Prot:
sp|Q02980|RBS_MALSP, E-value = 6e-56

BLAST vs NONCODE:
NONCQUT001608, E-value = 4e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Rosa chinensisEucalyptus grandis34.7135.486.44177forward
CNT30317063Rosa chinensisCorylus avellana36.2732.0183.78185forward
CNT30512567Rosa chinensisJuglans regia42.5551.9182.49217forward
CNT30616445Rosa chinensisSesamum indicum42.7557.8282.57218forward
CNT30268359Rosa chinensisChenopodium quinoa4035.2386.27204forward
CNT30727206Rosa chinensisCorchorus capsularis42.559.4284.33217forward
CNT3069740Rosa chinensisQuercus suber43.5324.586.49222forward
CNT30402284Rosa chinensisBeta vulgaris42.7599.5481.65218forward
CNT30525466Rosa chinensisPhaseolus vulgaris43.7375.0883.86223forward
CNT30629734Rosa chinensisVigna unguiculata4022.982.84204forward
CNT30508073Rosa chinensisNicotiana attenuata42.9419.5781.28219forward
CNT30710856Rosa chinensisGlycine max45.122.484.35230forward
CNT30166270Rosa chinensisPistacia vera42.9433.6483.56219forward
CNT30633374Rosa chinensisCapsicum annuum45.126.8184.78230forward
CNT3091618Rosa chinensisSolanum tuberosum42.5518.7682.49217forward
CNT30545373Rosa chinensisBrassica napus33.3327.8784.12170forward
CNT30235483Rosa chinensisBrassica oleracea36.0832.6882.61184forward
CNT30555545Rosa chinensisOryza glaberrima42.3526.1287.96216forward
CNT30258024Rosa chinensisAvena sativa36.2746.3785.41185forward
CNT30310235Rosa chinensisCamelina sativa32.5519.4886.75166forward
CNT3059910Rosa chinensisArabidopsis lyrata35.6934.7384.62182forward
CNT3074948Rosa chinensisBrassica juncea35.125.7683.8179forward
CNT30261239Rosa chinensisBrassica rapa35.122.6683.24179forward
CNT30613234Rosa chinensisArabis alpina36.8632.9884.04188forward
CNT30605276Rosa chinensisGossypium raimondii34.7144.8185.88177forward
CNT30625551Rosa chinensisDaucus carota40.9812.885.65209forward
CNT30351770Rosa chinensisEragrostis tef35.118.3484.36179forward
CNT30479552Rosa chinensisArabidopsis halleri35.6931.7184.07182forward
CNT30620550Rosa chinensisCajanus cajan42.9418.2883.56219forward
CNT30597241Rosa chinensisOryza meridionalis42.3524.886.57216forward
CNT30371468Rosa chinensisOryza glumipatula42.3518.7787.04216forward
CNT30705707Rosa chinensisPrunus avium38.0417.2188.66194forward
CNT3038822Rosa chinensisCucumis melo42.1648.3184.19215forward
CNT30104669Rosa chinensisOryza rufipogon42.3526.0686.57216forward
CNT30578501Rosa chinensisOryza barthii42.3519.2587.96216forward
CNT30118025Rosa chinensisOryza nivara42.3518.6787.5216forward
CNT30176139Rosa chinensisVigna angularis42.3516.0781.94216forward
CNT30551876Rosa chinensisOryza brachyantha41.5724.6585.85212forward

Expression of CNT30648517

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIRTKASGCAFLTSSSSFNTCAESVHPNMGSFHMVQYRPS*

>peptide 2 (39 aa)
SRKRKEKERCCTCSLIKTNTNSNWNSKGTTNGPSNSLKS*

>peptide 3 (65 aa)
MDGRMKQMTNASELEACRLVGDETDALHLTDVVESDDTDESIWVCLLDLLELLQHLCRVGASEHG*

Sequence

>CNT30648517
GTCTCGAAAAAGGAAAGAGAAAGAACGGTGTTGCACATGCAGCCTAATTAAAACAAATACAAATTCAAATTGGAATTCAAAGGGAACCACAAACGGACCC
AGCAACAGCTTAAAAAGCTAGCTCCAGGGGTACATTACATTAGATATAAAGGATGGATGGGCGGATGAAACAAATGACTAATGCAAGTGAATTAGAAGCC
TGCAGGCTTGTAGGCGATGAAACTGATGCACTGCACTTGACGGACGTTGTCGAATCCGATGATACGGACGAAAGCATCTGGGTGTGCCTTCTTGACCTCC
TCGAGCTCCTTCAACACTTGTGCAGAGTCGGTGCATCCGAACATGGGTAGCTTCCACATGGTCCAGTACCGGCCGTCATAGTATCCAGGTGACCTGTGGT
TCTCACGGTACACGAATCCGTAATCAACTTCCTTGGCCAAGGACTCGGGAGAAAGTGGTGGAAGGTAGGACAGAGTCTCGAACTTCTTCATACCAACTGT
AGGCCACACC