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Detailed information on CNT30705711


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 8e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727202Prunus aviumCorchorus capsularis27.58.2686.01143forward
CNT30625551Prunus aviumDaucus carota27.58.7684.62143forward
CNT30620782Prunus aviumCajanus cajan28.0813.6685.62146forward

Expression of CNT30705711

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MIRMKELGLAFLASSSSCNTWEESVHPNMGRLEASEWCNQASLCRGGTISVNRSHGSGRNHGGSHCSVLSLALFFARGLYF

>peptide 2 (38 aa)
GYHLIHEYSQHHIMNPKNTSKTKEIVSKKGKERNERRS*

Sequence

>CNT30705711
CGGATATCATCTTATTCATGAATATTCTCAACACCACATTATGAATCCGAAAAACACTTCGAAAACAAAGGAAATTGTCTCGAAAAAGGGAAAAGAAAGA
AACGAACGAAGGTCTTGAAAGGCCTAATTAAGTACAGACTTAAACAAACCACCGAGAACCTTGGCTAATAAGCCACAAACAACATAAAATGAAAATCATG
AAACTTGAAATTAGTAGCCTGAAGGCTTGTAGGCGATGAAACTGATGCACTGCACTTGACGAACGTTGTCGAATCCGATGATACGGATGAAGGAGTTGGG
GTTAGCCTTCTTGGCCTCCTCGAGCTCTTGCAACACTTGGGAAGAGTCTGTGCATCCAAACATGGGCAGACTTGAGGCCAGTGAATGGTGCAACCAAGCT
AGCTTGTGCCGGGGCGGCACGATCAGCGTAAACCGAAGCCACGGTAGCGGAAGAAATCATGGAGGAAGCCATTGCTCTGTGCTCTCTTTAGCCCTCTTCT
TTGCTAGAGGTCTTTACTTT