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Detailed information on CNT30525466


BLAST search results

BLAST vs Swiss-Prot:
sp|P00865|RBS1_SOYBN, E-value = 3e-50

BLAST vs NONCODE:
NONMEST000023, E-value = 3e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Phaseolus vulgarisCorylus avellana61.2831.4982.97182forward
CNT30512567Phaseolus vulgarisJuglans regia70.375081.34209forward
CNT30371985Phaseolus vulgarisArabidopsis thaliana23.2310.3389.8669forward
CNT30501577Phaseolus vulgarisCoffea canephora36.3616.5485.19108forward
CNT30616445Phaseolus vulgarisSesamum indicum22.5617.7792.5467forward
CNT30279728Phaseolus vulgarisChenopodium quinoa70.7128.3481.9210forward
CNT3020310Phaseolus vulgarisCitrullus lanatus23.9111.7785.9271forward
CNT30727206Phaseolus vulgarisCorchorus capsularis63.648.282.01189forward
CNT3069740Phaseolus vulgarisQuercus suber74.0724.2883.64220forward
CNT30381490Phaseolus vulgarisManihot esculenta22.2210.4389.3966forward
CNT30508073Phaseolus vulgarisNicotiana attenuata71.3818.9581.13212forward
CNT30166270Phaseolus vulgarisPistacia vera24.2411.0693.0672forward
CNT30633374Phaseolus vulgarisCapsicum annuum70.3724.3682.78209forward
CNT3091744Phaseolus vulgarisSolanum tuberosum67.3419.4982200forward
CNT30545373Phaseolus vulgarisBrassica napus26.612.9587.3479forward
CNT30235546Phaseolus vulgarisBrassica oleracea26.269.487.1878forward
CNT30508846Phaseolus vulgarisSolanum lycopersicum21.2113.2492.0663forward
CNT30146145Phaseolus vulgarisMedicago truncatula60.2716.8584.36179forward
CNT3059910Phaseolus vulgarisArabidopsis lyrata23.2313.1791.369forward
CNT3074948Phaseolus vulgarisBrassica juncea26.611.3787.3479forward
CNT30260270Phaseolus vulgarisBrassica rapa23.2310.5288.4169forward
CNT30648517Phaseolus vulgarisRosa chinensis75.0843.7383.86223forward
CNT30625551Phaseolus vulgarisDaucus carota74.4113.5381.45221forward
CNT30479552Phaseolus vulgarisArabidopsis halleri23.2312.0291.369forward
CNT30620550Phaseolus vulgarisCajanus cajan78.7919.5386.32234forward
CNT30355297Phaseolus vulgarisLactuca sativa40.7418.6786.78121forward
CNT3026569Phaseolus vulgarisPopulus trichocarpa24.5819.1184.9373forward
CNT30120451Phaseolus vulgarisCitrus clementina22.916.1588.2468forward
CNT3038822Phaseolus vulgarisCucumis melo71.3847.6481.6212forward
CNT30725197Phaseolus vulgarisLupinus angustifolius60.2725.3581.01179forward
CNT30115242Phaseolus vulgarisEutrema salsugineum23.2313.7788.4169forward

Expression of CNT30525466

Peptides detected in this lncRNA

>peptide 1 (78 aa)
PIRIPSTEPILSEEAWWLVGNETDALHLTNVVKSNDTDETIGMSSLSLVKLLQHLRRISAPKHRQLPHRPVPSIIVSR*

Sequence

>CNT30525466
CTCCAATTCGAATTCCAAGCACGGAACCCATCCTTTCCGAAGAAGCCTGGTGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGACGAACGTTGTCAA
ATCCAATGATACGGATGAAACCATCGGGATGAGCAGTCTGAGCCTCGTAAAGCTCCTTCAACACCTGAGAAGAATCAGTGCACCCAAACATAGGCAGCTT
CCACATCGTCCAGTACCTTCCATCATAGTATCCAGGTGACTTGTTGTGTTCACGGTACACGAAACCATGCTATCAACACACATCAACATCAAACACA