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Detailed information on CNT30279728


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XGX5|RBS2_AMAHP, E-value = 2e-88

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616445Chenopodium quinoaSesamum indicum13.0925.7390.7297forward
CNT3020258Chenopodium quinoaCitrullus lanatus26.3227.6283.59195forward
CNT3069740Chenopodium quinoaQuercus suber28.6123.484.91212forward
CNT30525466Chenopodium quinoaPhaseolus vulgaris28.3470.7181.9210forward
CNT30629734Chenopodium quinoaVigna unguiculata27.5322.983.33204forward
CNT30712618Chenopodium quinoaGlycine max27.835.2784.95206forward
CNT3083811Chenopodium quinoaVigna radiata27.9415.8783.57207forward
CNT30508846Chenopodium quinoaSolanum lycopersicum30.0946.8582.96223forward
CNT30625551Chenopodium quinoaDaucus carota30.0913.6684.3223forward
CNT30620550Chenopodium quinoaCajanus cajan27.9417.2885.02207forward
CNT30356658Chenopodium quinoaLactuca sativa28.4812.8384.36211forward
CNT3038822Chenopodium quinoaCucumis melo29.0148.3185.12215forward
CNT30176139Chenopodium quinoaVigna angularis27.5315.1881.86204forward
CNT30335392Chenopodium quinoaCynara cardunculus26.7224.2982.83198forward
CNT30725197Chenopodium quinoaLupinus angustifolius24.9726.282.16185forward

Expression of CNT30279728

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MHCTLPPLLAREVNSTLLFLVTGKAEVDFKPLNGATMLALAVLAVATEAAAFIKLEAMALCRLLLTL*

>peptide 2 (64 aa)
AFWLVGNETDALHLTEAVESNDTDEGVGVRLLGLLELVNNLGWVSATKHRQLPHCPVSSIIVSW*

>peptide 3 (40 aa)
MIRMKALGYAFLASSSSLTTWVGSVQPNIGNFHIVQYRPS*

Sequence

>CNT30279728
GCCTTCTGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGGAAGCTGTCGAATCCAATGATACGGATGAAGGCGTTGGGGTACGCCTTCTTGGCC
TCCTCGAGCTCGTTAACAACCTGGGTTGGGTCAGTGCAACCAAACATAGGCAACTTCCACATTGTCCAGTATCGTCCATCATAGTATCCTGGTGACCTGT
GGTTCTCACGGTACACAAATCCGTGCTACAATAAATAATAACTCAAAATGTGTTAGCTATGTACACACGTAAATATATAATATGTTATTAACCAATAAAA
AAATATTGTAATTAATGTGAAACTTACCTCGGTCTCGAATTCTAAGCAAGGAACCCATCCCTTGTTAAGAAGGTATTGGACTTCACTAAGCAAAGACTCA
GTGGTTAGAGGTGGAAGGTATTGGACTTCACTAAGCAAAGATTCAGTGGTTAGAGGTGGAAGGTAAGACAAAGTCTCAAACTTCTTCTTGCCAACAGGTG
GCCATACTTGCATGCATTGTACTCTGCCTCCATTGCTAGCAAGAGAGGTAAACTCAACGTTACTCTTCCTAGTAACAGGGAAAGCTGAAGTGGACTTCAA
ACCGTTGAATGGTGCAACCATGTTAGCCTTAGCAGTGCTGGCAGTGGCCACGGAGGCGGCGGCGTTCATCAAGCTAGAAGCCATGGCTTTATGTAGATTG
TTACTCACTCTCTAGCTCTTTTCCTTTAAGATTACTTGTTT