Detailed information on CNT30712618


BLAST search results

BLAST vs Swiss-Prot:
sp|P00865|RBS1_SOYBN, E-value = 5e-63

BLAST vs NONCODE:
NONCQUT001608, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535503Glycine maxEucalyptus grandis41.6128.1681.48243forward
CNT30279728Glycine maxChenopodium quinoa35.2727.884.95206forward
CNT30727195Glycine maxCorchorus capsularis40.5814.683.97237forward
CNT30402284Glycine maxBeta vulgaris14.3838.3690.4884forward
CNT30196843Glycine maxPisum sativum33.2240.7684.02194forward
CNT30508073Glycine maxNicotiana attenuata35.2718.4181.07206forward
CNT3091744Glycine maxSolanum tuberosum33.2218.9186.6194forward
CNT30508846Glycine maxSolanum lycopersicum35.2743.2883.5206forward
CNT30146094Glycine maxMedicago truncatula36.8242.2482.79215forward
CNT30312471Glycine maxCamelina sativa33.7326.381.73197forward
CNT3061903Glycine maxArabidopsis lyrata32.8820.1780.73192forward
CNT3077965Glycine maxBrassica juncea40.4128.281.36236forward
CNT30261239Glycine maxBrassica rapa32.8824.381.25192forward
CNT30613234Glycine maxArabis alpina40.0741.0579.91234forward
CNT30625551Glycine maxDaucus carota35.7912.883.25209forward
CNT30357026Glycine maxLactuca sativa36.333.3382.55212forward
CNT30409644Glycine maxPapaver somniferum31.3418.9881.97183forward
CNT30573704Glycine maxVitis vinifera34.4225.7481.59201forward
CNT30705707Glycine maxPrunus avium33.917.5785.86198forward
CNT3026569Glycine maxPopulus trichocarpa33.951.8382.83198forward

Expression of CNT30712618

Peptides detected in this lncRNA

>peptide 1 (38 aa)
QKIEDDEISKSKNKWECSLSTNKQSGVAATNALQIFHT*

>peptide 2 (65 aa)
MPAPARLTVVTAGEEIIEEAICFSFLVLNYLFFCCQISKLLLKLTIYNSVICVVLIRWCEMEGIGC

Sequence

>CNT30712618
ACAAAAAATAGAAGATGATGAAATCTCAAAAAGCAAAAACAAATGGGAATGTAGTTTAAGTACAAACAAACAAAGTGGGGTGGCGGCTACAAATGCTTTG
CAAATTTTTCACACTTAGAAGCCTGGGGGCTTGTAGGCGATGAAGCTGATGCACTGCACTTGGCGAACGTTGTCGAATCCGATGATACGGATGAAGCCGT
TGGGGTATGCAGTCTTAGCCTCTTGAAGCTCCTTCAACACCTGAGAAGCATCAGTGCAACCAAACATAGGCAGCTTCCACATGGTCCAGTAGCGTCCATC
GTAGTATCCTGGTGACCTGTTGTGCTCACGGTATTCTACTTCCTTTGCCAATTGTGCATCATCAAGGCCAGTGAATGGAGCAACCATGCCGGCACCGGCA
CGGTTGACAGTGGTAACAGCTGGGGAAGAGATCATTGAGGAAGCCATTTGCTTCTCCTTCTTAGTTCTCAACTACTTGTTCTTCTGCTGCCAGATATCCA
AGCTTCTGCTCAAACTTACTATATATAATAGTGTGATTTGTGTAGTACTAATCCGATGGTGTGAAATGGAGGGGATTGGTTGCT