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Detailed information on CNT3069740


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96542|RBS_BETPN, E-value = 7e-59

BLAST vs NONCODE:
NONCQUT001608, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Quercus suberEucalyptus grandis18.6533.885.8169forward
CNT30317063Quercus suberCorylus avellana20.6432.3584.49187forward
CNT30512567Quercus suberJuglans regia23.450.7289.62212forward
CNT30372132Quercus suberArabidopsis thaliana23.432.8282.08212forward
CNT30616445Quercus suberSesamum indicum24.9459.9581.86226forward
CNT30279728Quercus suberChenopodium quinoa23.428.6184.91212forward
CNT3020258Quercus suberCitrullus lanatus21.5227.6282.05195forward
CNT30727206Quercus suberCorchorus capsularis22.748.9486.89206forward
CNT30381490Quercus suberManihot esculenta21.330.4981.35193forward
CNT30402284Quercus suberBeta vulgaris23.5197.2682.16213forward
CNT30525466Quercus suberPhaseolus vulgaris24.2874.0783.64220forward
CNT30629734Quercus suberVigna unguiculata24.2824.6983.64220forward
CNT30196843Quercus suberPisum sativum22.4142.6580.79203forward
CNT30508073Quercus suberNicotiana attenuata22.8518.583.09207forward
CNT30710856Quercus suberGlycine max24.6121.7185.2223forward
CNT30166270Quercus suberPistacia vera24.1733.6487.21219forward
CNT30633374Quercus suberCapsicum annuum23.424.7180.19212forward
CNT3091618Quercus suberSolanum tuberosum23.418.3282.08212forward
CNT3083811Quercus suberVigna radiata24.1716.7980.82219forward
CNT30146878Quercus suberMedicago truncatula22.4116.6783.25203forward
CNT30313480Quercus suberCamelina sativa17.1125.4582.58155forward
CNT3059910Quercus suberArabidopsis lyrata19.7634.1681.56179forward
CNT30613234Quercus suberArabis alpina20.7532.9880.32188forward
CNT30605276Quercus suberGossypium raimondii19.9845.8286.19181forward
CNT30648517Quercus suberRosa chinensis24.543.5386.49222forward
CNT30625551Quercus suberDaucus carota23.412.9886.32212forward
CNT30479552Quercus suberArabidopsis halleri19.7631.1881.56179forward
CNT30620550Quercus suberCajanus cajan24.2818.3684.55220forward
CNT30705707Quercus suberPrunus avium20.5316.586.02186forward
CNT3030395Quercus suberTheobroma cacao11.1540.484.16101forward
CNT3026569Quercus suberPopulus trichocarpa21.085084.82191forward
CNT3038822Quercus suberCucumis melo22.7446.2984.95206forward
CNT30176139Quercus suberVigna angularis23.9516.1581.57217forward
CNT30335392Quercus suberCynara cardunculus21.7424.1783.76197forward
CNT30725197Quercus suberLupinus angustifolius21.0827.0582.72191forward

Expression of CNT3069740

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MIINILEARRLVSNETDALHLTHVVESNDSDKGIGVSLLDLLKLPQHLRGIGASKHGKLPHHPVASIIVPW*

>peptide 2 (33 aa)
EKKRKESYFSHRQKFNLIARVPSWNWQETSQFY*

Sequence

>CNT3069740
GAAAAGAAAAGAAAAGAAAGCTATTTCAGTCACAGACAAAAGTTTAACTTGATAGCAAGAGTTCCTTCATGGAATTGGCAAGAAACTAGCCAATTTTATT
AATCAGTTCTCATCCATTCCATGGGAAATCCGAAAAACACAAATTCAAAACAGAGCGAATTGTCTCGAAAGTGAAACAGAAATGTCTTTTGAAAGCCTAA
AAATACAATTTAAACAAATCAACCCTCAAAAAGGGTACATTTAGAGAATGATAATAAACATCTTAGAAGCCAGGAGGCTTGTAAGCAATGAAACTGATGC
ACTGCACTTGACGCACGTTGTCGAATCCAATGATTCGGACAAAGGCATTGGGGTAAGCCTTCTTGACCTCCTCAAGCTCCCTCAACACCTGAGAGGAATC
GGTGCATCCAAACATGGGAAGCTTCCACATCACCCAGTAGCGTCCATCATAGTACCCTGGTGACCTGTGGTTCTCACGGTACACAAAGGGGTGCTACATA
CACATAATAATTCAATTGTTAACCATCAGTAACTACATGTATACGTATATAAATTTTGTGTTATTCTAATCAACTTAATTAGGAACATATATATATATAT
ATATATATATAAAAGTTAATGAAAATGAATGATAAAGAGAACTTCAATGACCTCCAACTCAAATTCTAAGCAAGGAACCCATCCCTTTCGAAGAAGGTAG
TCTACTTCCTTAGCCAATGAATCAGCAGTAAGTGGTGATGTCATTGTTGGTCTTTTGGGTGACTGGGAAGGCTGCGTTAGACTTGAGGCCAGTGAATGGT
GCGACCATGCTGGCTTGAGCCAGGGTAGCCCGGTTAACGGGGGCGACGGTAGCGGAGGTAAGAATTGAGGAAGCCATTTCTTTCTTTCTCCTTTACTTCT
CAAAAT