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Detailed information on CNT30235713


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372132Brassica oleraceaArabidopsis thaliana47.8537.9390.61245forward
CNT30649450Brassica oleraceaRosa chinensis24.0220.7886.18123forward
CNT30625551Brassica oleraceaDaucus carota24.87.7885.04127forward
CNT30335392Brassica oleraceaCynara cardunculus24.2215.2183.87124forward

Expression of CNT30235713

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MILMKALGVLRFAFLDFLQHLSRVSASEQGKLPHCPVTSIIVSGCASVLTVHKSMLYKHESTIHNK

>peptide 2 (30 aa)
MFTITHLTIRYRMSEKQKTKGKRNRQFEMK*

Sequence

>CNT30235713
TTATCTAACCTGTTTTGTTAAGTTATTTTGACTGTTTTCCTATCCCAATAAGAGTTGAAAACCTAATAGCCATCGGAAAGTAACCAAGACGAAGAAGCAA
TATAGAGATTACATGTTCACAATCACACATTTGACAATCCGATATAGAATGTCTGAGAAACAGAAAACCAAAGGGAAAAGAAACAGACAATTCGAAATGA
AATGAGCAGAGATTATTATGTGAATGTCATAGCAAATTAAGCACCGGTGAAGCTTGGTGGTTTGTAGGCGATGAAACTGATGCACTGAACCTGACGGTTG
TTGTCAAATCCGATGATCCTGATGAAAGCGTTAGGGGTACTCCGTTTTGCATTCTTGGACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAG
GGAAGCTTCCACATTGTCCAGTAACGTCCATCATAGTATCCGGGTGTGCTTCCGTGCTCACGGTACACAAATCCATGCTATACAAACATGAGAGTACCAT
TCATAATAAGAA