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Detailed information on CNT3026569


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 6e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Populus trichocarpaJuglans regia44.540.6781.18170forward
CNT30282594Populus trichocarpaChenopodium quinoa35.0825.0586.57134forward
CNT30727206Populus trichocarpaCorchorus capsularis45.297.5185.55173forward
CNT3069740Populus trichocarpaQuercus suber5021.0884.82191forward
CNT30402284Populus trichocarpaBeta vulgaris21.7337.986.7583forward
CNT30525466Populus trichocarpaPhaseolus vulgaris19.1124.5884.9373forward
CNT30629679Populus trichocarpaVigna unguiculata42.9329.9881.1164forward
CNT30508073Populus trichocarpaNicotiana attenuata45.8115.6481.14175forward
CNT30712618Populus trichocarpaGlycine max51.8333.982.83198forward
CNT30166270Populus trichocarpaPistacia vera57.8533.9581.45221forward
CNT3091618Populus trichocarpaSolanum tuberosum45.8115.1380.57175forward
CNT30543822Populus trichocarpaBrassica napus18.8524.8387.572forward
CNT30310285Populus trichocarpaCamelina sativa13.3523.2994.1251forward
CNT30625551Populus trichocarpaDaucus carota5011.782.2191forward
CNT30620550Populus trichocarpaCajanus cajan48.6915.5382.8186forward
CNT30356658Populus trichocarpaLactuca sativa22.515.2388.3786forward
CNT30705707Populus trichocarpaPrunus avium46.615.7986.52178forward
CNT3030395Populus trichocarpaTheobroma cacao26.740.884.31102forward
CNT30725197Populus trichocarpaLupinus angustifolius45.2924.583.24173forward

Expression of CNT3026569

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKSQRKPSLTGYLAITPSICGFASIVRLKYSCHTVYI

>peptide 2 (45 aa)
GDKTDALHLTSVVESNDTDKGVRVSFLRLLELNQHLRCLSASKHG*

>peptide 3 (38 aa)
MLACAGVRLTVATAADEITEEAISYRLLSYYTLYMWFC*

Sequence

>CNT3026569
GGCGATAAAACTGATGCACTGCACTTGACGAGTGTTGTCGAATCCAATGATACGGATAAAGGAGTTAGGGTAAGCTTTCTTCGCCTCCTCGAGCTCAATC
AGCACCTGAGATGCCTCAGTGCATCCAAACATGGGTAGTTTCCACATAGTCCAGTAGCGTCCATCATAGTACCCTGGGGACTGGTGGTGCTCGCGGTAGA
CTTGAGGCCGTTGAATGGTGCAACCATGTTGGCCTGTGCAGGGGTGCGGTTAACTGTGGCAACGGCCGCCGATGAAATCACAGAGGAAGCCATCTCTTAC
AGGCTACTTAGCTATTACACCCTCTATATGTGGTTTTGCTAGTATTGTAAGATTGAAGTACTCCTGCCACACCGTATATATA