« Back to Citrullus lanatus search


Detailed information on CNT3020258


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 2e-37

BLAST vs NONCODE:
NONCQUT001608, E-value = 1e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Citrullus lanatusJuglans regia27.947.1380.2197forward
CNT30372132Citrullus lanatusArabidopsis thaliana26.6329.181.38188forward
CNT30279728Citrullus lanatusChenopodium quinoa27.6226.3283.59195forward
CNT30727206Citrullus lanatusCorchorus capsularis28.058.5983.33198forward
CNT3069740Citrullus lanatusQuercus suber27.6221.5282.05195forward
CNT30402284Citrullus lanatusBeta vulgaris26.6385.8481.38188forward
CNT30629734Citrullus lanatusVigna unguiculata28.0522.2283.33198forward
CNT30508073Citrullus lanatusNicotiana attenuata26.7716.8981.48189forward
CNT30712674Citrullus lanatusGlycine max29.1833.2883.98206forward
CNT3083811Citrullus lanatusVigna radiata27.3414.880.31193forward
CNT30310235Citrullus lanatusCamelina sativa26.221.7181.62185forward
CNT3059910Citrullus lanatusArabidopsis lyrata25.7834.7381.32182forward
CNT30613234Citrullus lanatusArabis alpina27.0533.5180.1191forward
CNT30605276Citrullus lanatusGossypium raimondii25.3545.3285.47179forward
CNT30625551Citrullus lanatusDaucus carota28.1912.1981.41199forward
CNT30620550Citrullus lanatusCajanus cajan27.6216.2882.56195forward
CNT30355748Citrullus lanatusLactuca sativa26.237.683.24185forward
CNT3038822Citrullus lanatusCucumis melo28.0544.4992.93198forward
CNT30176139Citrullus lanatusVigna angularis27.3414.3681.35193forward
CNT3039544Citrullus lanatusMarchantia polymorpha7.9321.0594.6456forward

Expression of CNT3020258

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MHTGFIGNLTTNQSIIYSNSNWKVEEINIGIEVHRSKRKRKKKKKMGNWIESQVMWKRGGKRQMLEIRLKKAGNGIS*

>peptide 2 (71 aa)
MESARVELRGLVDNETDALDLTDVVKANNPDECVGVVLLGLLNLLNHLSRIGATKHGQLPHGPVASIVVSW*

>peptide 3 (45 aa)
MRRGSASWPPQSPESPEPHRCNQTWATSTWSSSVHRSILVTCGSH*

>peptide 4 (37 aa)
MKLTVEWLKLIQSYRYRESNVHHTHTNPNRRLHSELD*

Sequence

>CNT3020258
CGAAGTTTAATAATGAAATATGAAGCTAACGGTTGAGTGGCTGAAATTGATTCAATCTTATCGTTATCGTGAATCTAATGTGCATCATACACACACAAAC
CCGAATCGAAGATTGCACAGCGAATTAGATTGAATTCCAGAAGAAAGATGCATACAGGATTCATAGGGAATTTAACAACAAATCAAAGCATCATTTATTC
CAATTCGAATTGGAAAGTCGAGGAAATAAACATAGGGATTGAAGTACACAGATCAAAACGTAAAAGGAAAAAAAAAAAAAAAATGGGAAATTGGATTGAA
AGCCAAGTGATGTGGAAGCGAGGTGGAAAAAGGCAAATGCTGGAAATTCGCCTCAAGAAAGCTGGGAATGGAATCAGCTAGAGTAGAACTTAGGGGGCTT
GTAGACAATGAAACTGATGCACTGGACTTGACGGACGTTGTCAAAGCCAATAACCCTGATGAATGCGTCGGGGTAGTGCTTCTTGGCCTCCTCAATCTCC
TGAATCACCTGAGCCGCATCGGTGCAACCAAACATGGGCAACTTCCACATGGTCCAGTAGCGTCCATCGTAGTATCCTGGTGACCTGTGGAAGCCATTGA
TGCCTCTTTTCCTTGGGAGTTTAGAGGGATTTACTAGAAGCTAGCTAGTAGAGTGCTTGAAAGCTCTTGCTGTTGGGTCTGAGAGGCCTTGTACTGTGAA
ATGGTG