Detailed information on CNT30261182


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30146185Brassica rapaMedicago truncatula27.247.0789.4185forward
CNT30625551Brassica rapaDaucus carota24.684.7287.0177forward
CNT30409644Brassica rapaPapaver somniferum21.797.0588.2468forward

Expression of CNT30261182

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSIDYYMIVLERKLSTGEAWWLVGDENDALDLTVVALGYSVLHSCTSFNT*

Sequence

>CNT30261182
GTAGCGGCAGTGCTGACAGAAATCCAAAGAGGATAAAAACAGGCAATTGGAAGTGAAATGAGTATAGATTATTATATGATTGTTTTAGAAAGGAAATTAA
GCACCGGTGAAGCTTGGTGGCTTGTAGGCGATGAAAATGATGCACTGGACCTGACGGTTGTTGCGTTAGGGTACTCCGTCTTGCACTCTTGCACTTCCTT
CAACACTTGAGAAGAGTCGGTGCATCCGAACAAAGGAAGCTTCCACATTGTCCAATAACGGCCATCGTAGTATCCAGGTGTGCTTCCATGCTCACGGTAC
ACAAATCCGTGC