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Detailed information on CNT3038822


BLAST search results

BLAST vs Swiss-Prot:
sp|P24007|RBS_PYRPY, E-value = 1e-46

BLAST vs NONCODE:
NONCQUT001608, E-value = 8e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Cucumis meloEucalyptus grandis40.936.482.97182forward
CNT30317063Cucumis meloCorylus avellana41.832.1882.26186forward
CNT30514517Cucumis meloJuglans regia48.9937.284.4218forward
CNT30372132Cucumis meloArabidopsis thaliana43.630.0380.93194forward
CNT30616445Cucumis meloSesamum indicum17.7520.9589.8779forward
CNT30279728Cucumis meloChenopodium quinoa48.3129.0185.12215forward
CNT3020258Cucumis meloCitrullus lanatus44.4928.0592.93198forward
CNT30727206Cucumis meloCorchorus capsularis49.669.5986.88221forward
CNT3069740Cucumis meloQuercus suber46.2922.7484.95206forward
CNT30402284Cucumis meloBeta vulgaris48.3198.1781.86215forward
CNT30525466Cucumis meloPhaseolus vulgaris47.6471.3881.6212forward
CNT30629734Cucumis meloVigna unguiculata46.9723.4680.38209forward
CNT30508073Cucumis meloNicotiana attenuata48.3119.2182.33215forward
CNT30710856Cucumis meloGlycine max48.5421.0385.19216forward
CNT30166270Cucumis meloPistacia vera46.2931.6481.07206forward
CNT30633374Cucumis meloCapsicum annuum48.5425.1781.48216forward
CNT3091618Cucumis meloSolanum tuberosum48.5418.6781.48216forward
CNT3083811Cucumis meloVigna radiata21.127.2190.4394forward
CNT30310235Cucumis meloCamelina sativa42.2522.0783.51188forward
CNT3059910Cucumis meloArabidopsis lyrata42.2535.8881.91188forward
CNT30613234Cucumis meloArabis alpina43.634.0481.44194forward
CNT30605276Cucumis meloGossypium raimondii40.2245.3286.59179forward
CNT30648517Cucumis meloRosa chinensis48.3142.1684.19215forward
CNT30625551Cucumis meloDaucus carota46.9712.884.21209forward
CNT30620550Cucumis meloCajanus cajan46.9717.4586.12209forward
CNT30356658Cucumis meloLactuca sativa44.9412.1682200forward
CNT30705707Cucumis meloPrunus avium41.5716.4283.24185forward
CNT30585439Cucumis meloEchinochloa crusgalli2014.0689.8989forward
CNT30176139Cucumis meloVigna angularis45.6215.181.77203forward
CNT30335392Cucumis meloCynara cardunculus22.9212.5287.25102forward
CNT3050674Cucumis meloCucumis sativus45.6227.190.64203forward

Expression of CNT3038822

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNRCSQTWAASTWSSSVHRSILVTCGSHGKRIHS

Sequence

>CNT3038822
TTGATTGATAGGATAATTCAAGAACAAATCAAAGCATCATTTATTCCAATTCGAATTGGAAAGTCGGGGAAATAAACATAGTGGGATTAAACAGACAAAC
CAAAACGTAAAATGGAAAAATAGGAAAAAAAGAGTAAAGAAAAAAAATTAAAGGAGGGAAATTTGGTTGAAACCACCCAAGTGATGAAGCTTTAAAAAAG
GCAAATGATGTGTAGAATCTTGGGGGCTTGTAGGCGATGAAACTGATGCACTGCACTTGACGGACGTTGTCAAAGCCAATAACCCTGATGTATGCGTCGG
GGTATTCCTTCTTGGCCTCCTCAATCTCATTAACCACCTGAGATGAATCGGTGCAGCCAAACATGGGCAGCTTCCACATGGTCCAGTAGCGTCCATCGTA
GTATCCTGGTGACCTGTGGTTCTCACGGTAAACGAATCCACTCTG