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Detailed information on CNT30605276

BLAST search results

BLAST vs Swiss-Prot:
sp|P31333|RBS_GOSHI, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535656	Gossypium raimondii	Eucalyptus grandis	45.57	36	88.89	180	forward
CNT30317063	Gossypium raimondii	Corylus avellana	45.82	31.31	86.74	181	forward
CNT30514732	Gossypium raimondii	Juglans regia	45.82	20.43	87.29	181	forward
CNT30372132	Gossypium raimondii	Arabidopsis thaliana	45.32	27.71	87.15	179	forward
CNT30501577	Gossypium raimondii	Coffea canephora	43.29	26.19	82.46	171	forward
CNT30616510	Gossypium raimondii	Sesamum indicum	46.08	13.19	82.97	182	forward
CNT30268359	Gossypium raimondii	Chenopodium quinoa	48.61	33.16	83.85	192	forward
CNT3020258	Gossypium raimondii	Citrullus lanatus	45.32	25.35	85.47	179	forward
CNT30727206	Gossypium raimondii	Corchorus capsularis	45.57	7.81	89.44	180	forward
CNT3069740	Gossypium raimondii	Quercus suber	45.82	19.98	86.19	181	forward
CNT30381490	Gossypium raimondii	Manihot esculenta	21.27	13.27	91.67	84	forward
CNT30402284	Gossypium raimondii	Beta vulgaris	45.57	82.19	83.89	180	forward
CNT30525413	Gossypium raimondii	Phaseolus vulgaris	49.11	24.97	81.96	194	forward
CNT30629734	Gossypium raimondii	Vigna unguiculata	44.81	19.87	81.36	177	forward
CNT30508072	Gossypium raimondii	Nicotiana attenuata	46.84	21.64	82.7	185	forward
CNT30710856	Gossypium raimondii	Glycine max	45.32	17.43	83.8	179	forward
CNT30166270	Gossypium raimondii	Pistacia vera	45.32	27.5	85.47	179	forward
CNT30545373	Gossypium raimondii	Brassica napus	45.06	29.18	83.15	178	forward
CNT30235546	Gossypium raimondii	Brassica oleracea	45.32	21.57	83.8	179	forward
CNT30146185	Gossypium raimondii	Medicago truncatula	20.76	6.82	84.15	82	forward
CNT30310235	Gossypium raimondii	Camelina sativa	45.32	21.01	86.59	179	forward
CNT3059910	Gossypium raimondii	Arabidopsis lyrata	45.32	34.16	86.59	179	forward
CNT3074948	Gossypium raimondii	Brassica juncea	44.56	25.32	83.52	176	forward
CNT30261239	Gossypium raimondii	Brassica rapa	44.56	22.28	83.52	176	forward
CNT30613234	Gossypium raimondii	Arabis alpina	45.32	31.4	84.92	179	forward
CNT30648517	Gossypium raimondii	Rosa chinensis	44.81	34.71	85.88	177	forward
CNT30625551	Gossypium raimondii	Daucus carota	45.57	11.02	83.33	180	forward
CNT30479552	Gossypium raimondii	Arabidopsis halleri	45.32	31.18	85.47	179	forward
CNT30620550	Gossypium raimondii	Cajanus cajan	45.32	14.94	85.47	179	forward
CNT30355748	Gossypium raimondii	Lactuca sativa	45.32	36.38	83.8	179	forward
CNT30481499	Gossypium raimondii	Chara braunii	41.01	15.87	82.1	162	forward
CNT30573761	Gossypium raimondii	Vitis vinifera	19.75	20.31	89.74	78	forward
CNT30705707	Gossypium raimondii	Prunus avium	48.86	17.13	83.94	193	forward
CNT3038822	Gossypium raimondii	Cucumis melo	45.32	40.22	86.59	179	forward
CNT30335392	Gossypium raimondii	Cynara cardunculus	43.29	20.98	85.38	171	forward
CNT30725197	Gossypium raimondii	Lupinus angustifolius	45.57	25.5	81.67	180	forward
CNT3050674	Gossypium raimondii	Cucumis sativus	22.53	11.88	87.64	89	forward
CNT30115242	Gossypium raimondii	Eutrema salsugineum	38.73	30.54	83.01	153	forward
CNT3040427	Gossypium raimondii	Marchantia polymorpha	24.3	14.61	90.62	96	forward

Expression of CNT30605276

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MHWGIPSCIPQAPSTPEPSRCTRTWAASTWSSSVHRSTWVSSSTYDARIP

>peptide 2 (37 aa)
GRTGFMKYGKKLPFYSLVLSRSIGNPKTKQRERPQAK*

>peptide 3 (63 aa)
RKNWIHEIWQETTFLFISSQPFHWKSKNKTKRKTPSQITQLKKKKKKGGGGSKQLSSLQACRQ*

Sequence

>CNT30605276
AGGAAGAACTGGATTCATGAAATATGGCAAGAAACTACCTTTTTATTCATTAGTTCTCAGCCGTTCCATTGGAAATCCAAAAACAAAACAAAGAGAAAGA
CCCCAAGCCAAATAACTCAACTAAAAAAGAAAAAGAAAAAGGGGGGGGGGGGAAGTAAACAACTTAGTAGCCTTCAGGCTTGTAGGCAATGAAACTAATG
CACTGCACTTGACGAACGTTGTCGAACCCAATGATTCTAATGAATGCATTGGGGTATTCCTTCTTGCATTCCTCAAGCTCCTTCAACACCTGAGCCGAGT
CGGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGTCCATCGTAGTACGTGGGTAAGTTCGAGTACTTACGATGCACGAATCCCTCC