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Detailed information on CNT30542732


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06611|PIP12_ARATH, E-value = 2e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676770Brassica napusSetaria viridis8.6327.4989.6658forward
CNT30523825Brassica napusSetaria italica15.0331.9683.17101forward
CNT30548370Brassica napusIpomoea triloba11.4633.0588.3177forward
CNT30375144Brassica napusArabidopsis thaliana39.5865.6887.22266forward
CNT3020673Brassica napusCitrullus lanatus20.5412.9884.78138forward
CNT30709876Brassica napusGlycine max14.5827.4584.6998forward
CNT30590722Brassica napusMusa acuminata18.628.4181.6125forward
CNT30435838Brassica napusAegilops tauschii10.7128.9288.8972forward
CNT3061285Brassica napusArabidopsis lyrata39.5836.5989.47266forward
CNT30261241Brassica napusBrassica rapa39.5873.0895.49266forward
CNT30211930Brassica napusHelianthus annuus27.0854.9880.22182forward
CNT30680173Brassica napusTriticum urartu10.7129.6388.8972forward
CNT30477407Brassica napusArabidopsis halleri23.5124.7690.51158forward
CNT30595794Brassica napusOryza meridionalis11.3134.785.5376forward
CNT30644102Brassica napusCannabis sativa16.8225.9881.42113forward
CNT30325169Brassica napusAsparagus officinalis17.7144.9184.03119forward
CNT30120512Brassica napusCitrus clementina12.9529.185.0687forward
CNT30575194Brassica napusOryza barthii8.7828.7888.1459forward
CNT30116468Brassica napusOryza nivara20.9819.8680.85141forward
CNT30603734Brassica napusOryza punctata30.3615.5479.41204forward
CNT3065055Brassica napusSelaginella moellendorffii11.0120.0589.1974forward
CNT3050609Brassica napusCucumis sativus20.5414.0182.61138forward

Expression of CNT30542732

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MGCLSGNLLAPTLTSSSLPSISKSFLSLLRVFLSM*

>peptide 2 (47 aa)
GNMGVPSVSLGVSGGKDGVNEDKGSNNLSSKTTSFGVTRSYSVGSTS*

Sequence

>CNT30542732
GGGAACATGGGAGTCCCGAGCGTTTCTCTTGGCGTCAGTGGCGGAAAAGACGGTGTAAACGAGGACAAAGGTTCCAATAATCTCAGCTCCAAGACCACTT
CCTTTGGTGTAACCAGGAGCTACAGTGTTGGCTCCACCTCCTAGAGCTTGGTATTGCTTAGGTTGGAAACCCTTCACCACACCAGCTCCACAGATGGCTC
CTAAGCACTGCATCACTATGTAGTACACAGCTCTTGTAAGCGAAAGCTTCCTGGCCAAGAAAAGACCAAACGTGACAGCTGGGTGGTGGTGACTTACCGG
AGATACCAGCGGTGCAGTAGACAAGAGCGAAGATCATACCACCGAAGGCCCAAGCGATACCTTGGATTCCGACAGAAGCACACATGTTCGGTGCCCTCTT
CACGCCCATGACGGTCAACACAGTAATGTAAAGGAAGAGAAACGTGGCGATGAACTCAGCGATACCGGCTCTCCAGAAGGACCAGGAAGCAAGCTCGCCT
GGCTCGAACAGGGGAGCAGGAGGTGGCTCCTTGTAGTCCTTGTCGCTCTGAGCCGATGTTCCGATGGGTTGTCTCTCCGGAAACTTGTTAGCTCCGACCC
TAACATCTTCTTCCTTGCCTTCCATCTCCAAGTCCTTTCTCTCTCTCTTAAGAGTGTTTCTTTCTATGTGAG