Detailed information on CNT30680173


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AQU5|PIP13_MAIZE, E-value = 6e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676770Triticum urartuSetaria viridis36.6342.1896.6389forward
CNT30524031Triticum urartuSetaria italica53.547.2793.08130forward
CNT30531266Triticum urartuEucalyptus grandis34.1619.6289.1683forward
CNT30546615Triticum urartuIpomoea triloba45.2740.8986.36110forward
CNT30517210Triticum urartuJuglans regia30.4511.5190.5474forward
CNT3019525Triticum urartuCitrullus lanatus22.2224.6692.5954forward
CNT3070603Triticum urartuQuercus suber24.2815.5388.1459forward
CNT30710681Triticum urartuGlycine max29.229.8185.9271forward
CNT3046104Triticum urartuPrunus dulcis32.117.6585.978forward
CNT30163276Triticum urartuPistacia vera20.5816.239250forward
CNT30568278Triticum urartuActinidia chinensis28.8114.292.8670forward
CNT30542732Triticum urartuBrassica napus29.6310.7188.8972forward
CNT30436848Triticum urartuAegilops tauschii10082.65100243forward
CNT3060017Triticum urartuArabidopsis lyrata27.168.2186.3666reverse complement
CNT3079298Triticum urartuBrassica juncea24.6914.1286.6760forward
CNT30261241Triticum urartuBrassica rapa21.8114.5688.6853forward
CNT30599410Triticum urartuFraxinus excelsior32.9212.0783.7580forward
CNT30213185Triticum urartuHelianthus annuus25.5111.2187.162forward
CNT30477240Triticum urartuArabidopsis halleri34.1614.4185.5483forward
CNT30355349Triticum urartuLactuca sativa26.3410.6785.9464forward
CNT30706531Triticum urartuPrunus avium34.5711.986.984forward
CNT3054194Triticum urartuAmborella trichopoda20.580.889050forward
CNT30320106Triticum urartuAsparagus officinalis37.865.1585.8792forward
CNT3038708Triticum urartuCucumis melo37.046.8587.7890forward
CNT30331328Triticum urartuDioscorea rotundata20.589.7510050forward
CNT30575194Triticum urartuOryza barthii27.1632.296.9766forward
CNT30112149Triticum urartuFicus carica27.988.6689.7168forward
CNT3065055Triticum urartuSelaginella moellendorffii26.7517.6287.6965forward
CNT3050391Triticum urartuCucumis sativus35.813.6886.2187forward

Expression of CNT30680173

Peptides detected in this lncRNA

>peptide 1 (80 aa)
GNVGVPGVPLGVGGGEDGVDEDEGADDLGAEAGALGVAGRHHVGAAAVAHALHDDVEHRPGQRQLPRQEQPEGHRRVDVPA

Sequence

>CNT30680173
GGGAACGTGGGAGTCCCTGGCGTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGGTGCCGATGATCTCGGCGCCGAGGCCGGAG
CCCTTGGTGTAGCCGGGCGCCACCACGTTGGCGCCGCCGCCGTTGCCCATGCACTGCATGATGATGTAGAACACCGCCCGGGTCAGCGACAGCTTCCTCG
CCAGGAACAGCCCGAAGGTCACCGCCGGGTTGATGTGCCCGCC