Detailed information on CNT30709876


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 6e-59

BLAST vs NONCODE:
NONGMAT001758, E-value = 4e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Glycine maxCorylus avellana28.5731.9782.35102forward
CNT30549116Glycine maxIpomoea triloba24.9331.3488.7689forward
CNT3020673Glycine maxCitrullus lanatus24.378.1883.9187forward
CNT30728342Glycine maxCorchorus capsularis36.4119.790130forward
CNT30288667Glycine maxTriticum aestivum24.6511.485.2388forward
CNT30224613Glycine maxHordeum vulgare24.6532.4782.9588forward
CNT30560769Glycine maxActinidia chinensis56.0229.8584.5200forward
CNT30590285Glycine maxMusa acuminata30.8110.3283.64110forward
CNT30542732Glycine maxBrassica napus27.4514.5884.6998forward
CNT30658930Glycine maxTriticum dicoccoides24.6536.8285.2388forward
CNT3061285Glycine maxArabidopsis lyrata26.0512.7987.193forward
CNT30681640Glycine maxTriticum urartu24.657.584.0988forward
CNT30477407Glycine maxArabidopsis halleri26.0514.5887.193forward
CNT30644102Glycine maxCannabis sativa68.6356.3282.04245forward
CNT3024497Glycine maxPopulus trichocarpa61.6278.2980.91220forward
CNT30319296Glycine maxAsparagus officinalis24.0919.4189.5386forward
CNT30118191Glycine maxCitrus clementina25.778.8590.2292forward
CNT3038976Glycine maxCucumis melo21.2911.1385.5376forward
CNT30603734Glycine maxOryza punctata24.656.782.9588forward
CNT30112149Glycine maxFicus carica27.4512.4884.6998forward
CNT3065055Glycine maxSelaginella moellendorffii21.2920.689.4776forward
CNT3050391Glycine maxCucumis sativus23.2513.0585.5483forward

Expression of CNT30709876

Peptides detected in this lncRNA

>peptide 1 (74 aa)
SVSLGISGRENGVDKNKSANNLSSKSITFGVSRIHKIGSSFEQLIVSIALKALHHTSPADGSKTLHDNVEQCPC*

Sequence

>CNT30709876
TAGCGTTTCTCTTGGCATCAGTGGCAGAGAAAACGGTGTAGACAAGAACAAAAGTGCCAACAATCTCAGCTCCAAGTCCATCACCTTTGGTGTATCCAGA
ATTCACAAAATTGGCTCCTCCTTTGAACAACTCATAGTTAGCATTGCCCTCAAAGCCCTTCACCACACCAGCCCCGCAGATGGCTCCAAGACACTGCATG
ATAATGTAGAACAGTGCCCTTGTTAGGGACAGCTTCCTTGCCAAAAACAGACCAAAGGCCCAAGCAATGCCTTGAATGCCAACAGAGGCACACTTGGAGG
GTGACCTGTTGACACCCATGACAGTTAAGATGGTAATGTAGAGGAACAAGAAAGTTG