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Detailed information on CNT30676770


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531266Setaria viridisEucalyptus grandis37.9118.9186.2580forward
CNT30546615Setaria viridisIpomoea triloba43.634.285.8792forward
CNT30728378Setaria viridisCorchorus capsularis26.544.4687.556forward
CNT3070603Setaria viridisQuercus suber25.1213.9588.6853forward
CNT30631135Setaria viridisVigna unguiculata40.767.3384.8886forward
CNT30542732Setaria viridisBrassica napus27.498.6389.6658forward
CNT30435838Setaria viridisAegilops tauschii42.1835.7496.6389forward
CNT30657898Setaria viridisTriticum dicoccoides43.612.5989.1392forward
CNT3013604Setaria viridisZea mays44.086.7990.3293forward
CNT30653715Setaria viridisRosa chinensis33.1812.019070forward
CNT30680173Setaria viridisTriticum urartu42.1836.6396.6389forward
CNT30596194Setaria viridisOryza meridionalis32.715.8688.4169forward
CNT30370019Setaria viridisOryza glumipatula33.6513.9888.7371forward
CNT30319296Setaria viridisAsparagus officinalis40.7619.4184.8886forward
CNT30331328Setaria viridisDioscorea rotundata23.229.5595.9249forward
CNT30112149Setaria viridisFicus carica34.129.1791.6772forward
CNT3065055Setaria viridisSelaginella moellendorffii41.2323.5885.0687forward
CNT3039904Setaria viridisMarchantia polymorpha43.65.4684.7892forward

Expression of CNT30676770

Peptides detected in this lncRNA

>peptide 1 (55 aa)
RDVGVPGVPLGVGGGEDGVDEDEGADDLSAEYLLAPRRTSSSLPSMFACNRRLAS*

>peptide 2 (31 aa)
MKVPTISAPSTCWRPGERPPPCPPCLPATGD*

Sequence

>CNT30676770
CGGGACGTGGGAGTCCCTGGCGTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGATGAAGGTGCCGACGATCTCAGCGCCGAGTACTTGT
TGGCGCCCAGGCGAACGTCCTCCTCCTTGCCCTCCATGTTTGCCTGCAACCGGAGACTAGCTAGCTAGAAGCAGCTGCCTGAGCAAAAGCTGAGATGGTC
TGGTGCTTTCT