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Detailed information on CNT30435838


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AQU5|PIP13_MAIZE, E-value = 8e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Aegilops tauschiiOryza sativa32.1310.5496.2580forward
CNT30676770Aegilops tauschiiSetaria viridis35.7442.1896.6389forward
CNT30524031Aegilops tauschiiSetaria italica54.2249.0993.33135forward
CNT30546615Aegilops tauschiiIpomoea triloba44.1840.8986.36110forward
CNT30517210Aegilops tauschiiJuglans regia29.7211.5190.5474forward
CNT30375565Aegilops tauschiiArabidopsis thaliana33.3333.683.1383forward
CNT30615812Aegilops tauschiiSesamum indicum24.929.1187.162forward
CNT3019525Aegilops tauschiiCitrullus lanatus21.6924.6692.5954forward
CNT3070603Aegilops tauschiiQuercus suber23.6915.5388.1459forward
CNT30710681Aegilops tauschiiGlycine max28.519.8185.9271forward
CNT3046104Aegilops tauschiiPrunus dulcis31.3317.6585.978forward
CNT30163276Aegilops tauschiiPistacia vera20.0816.239250forward
CNT30287172Aegilops tauschiiTriticum aestivum38.5538.110096forward
CNT30568278Aegilops tauschiiActinidia chinensis28.1114.292.8670forward
CNT30542732Aegilops tauschiiBrassica napus28.9210.7188.8972forward
CNT30552571Aegilops tauschiiOryza glaberrima43.7843.0891.74109forward
CNT3060017Aegilops tauschiiArabidopsis lyrata26.518.2186.3666reverse complement
CNT3079298Aegilops tauschiiBrassica juncea24.114.1286.6760forward
CNT30261241Aegilops tauschiiBrassica rapa21.2914.5688.6853forward
CNT30599410Aegilops tauschiiFraxinus excelsior32.1312.0783.7580forward
CNT30213185Aegilops tauschiiHelianthus annuus24.911.2187.162forward
CNT30477240Aegilops tauschiiArabidopsis halleri33.3314.4185.5483forward
CNT30355349Aegilops tauschiiLactuca sativa25.710.6785.9464forward
CNT30706531Aegilops tauschiiPrunus avium33.7311.986.984forward
CNT3054194Aegilops tauschiiAmborella trichopoda20.080.889050forward
CNT3038708Aegilops tauschiiCucumis melo36.95788.0492forward
CNT30112149Aegilops tauschiiFicus carica35.7411.3486.5289forward
CNT3065055Aegilops tauschiiSelaginella moellendorffii26.117.6287.6965forward
CNT3050457Aegilops tauschiiCucumis sativus35.7415.4886.5289forward

Expression of CNT30435838

Peptides detected in this lncRNA

>peptide 1 (82 aa)
GNVGVPGVPLGVGGGEDGVDEDEGADDLGAEAGALGVAGRHHVGAAAVAHVQALHDDVEHRPGQRQLPRQEQPEGHRRVDVPA

Sequence

>CNT30435838
GGGAACGTGGGAGTCCCTGGCGTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGGTGCCGATGATCTCGGCGCCGAGGCCGGAG
CCCTTGGTGTAGCCGGGCGCCACCACGTTGGCGCCGCCGCCGTTGCCCATGTACAGGCACTGCATGATGATGTAGAACACCGCCCGGGTCAGCGACAGCT
TCCTCGCCAGGAACAGCCCGAAGGTCACCGCCGGGTTGATGTGCCCGCC