Detailed information on CNT30548370


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070603Ipomoea trilobaQuercus suber36.9122.6384.8886forward
CNT30710681Ipomoea trilobaGlycine max33.0510.6484.4277forward
CNT30159576Ipomoea trilobaPistacia vera29.188.5988.2468forward
CNT30289517Ipomoea trilobaTriticum aestivum22.759.5888.6853forward
CNT30387764Ipomoea trilobaTriticum turgidum22.755.9888.6853forward
CNT30542732Ipomoea trilobaBrassica napus33.0511.4688.3177forward
CNT30659451Ipomoea trilobaTriticum dicoccoides22.7514.7688.6853forward
CNT3061285Ipomoea trilobaArabidopsis lyrata36.9111.8386.0586forward
CNT30261241Ipomoea trilobaBrassica rapa33.0521.1588.3177forward
CNT30139319Ipomoea trilobaLolium perenne27.95.5686.1565forward
CNT30653715Ipomoea trilobaRosa chinensis34.3313.728580forward
CNT30477407Ipomoea trilobaArabidopsis halleri38.213.9585.3989forward
CNT3024289Ipomoea trilobaPopulus trichocarpa20.179.5991.4947forward

Expression of CNT30548370

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MNAFTSPTPQMPPKHCATIYNTALTRDTF

Sequence

>CNT30548370
ACAGGGATATGAGAGTCGCGGGCGTTCCTCTTGGGGTCGGTGGCTGAAAACACGGTGTAAACCAGGACAAAAGTTCCAATAATCTCAGCACCCAAAGCGG
AGCCCCGGTTTGCACCGCCGCCTTGTCTGTTATAGGAATCCTTCATGAACGCCTTCACCAGCCCTACTCCGCAAATGCCACCCAAACACTGTGCTACCAT
ATACAACACAGCCCTCACCAGAGACACCTTCCG