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Detailed information on CNT30477407


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548370Arabidopsis halleriIpomoea triloba13.9538.285.3989forward
CNT30375144Arabidopsis halleriArabidopsis thaliana25.5540.2596.32163forward
CNT30404916Arabidopsis halleriBeta vulgaris14.1122.2285.5690forward
CNT30709876Arabidopsis halleriGlycine max14.5826.0587.193forward
CNT30542732Arabidopsis halleriBrassica napus24.7623.5190.51158forward
CNT3061285Arabidopsis halleriArabidopsis lyrata25.3922.2898.77162forward
CNT30261241Arabidopsis halleriBrassica rapa24.7643.4191.14158forward
CNT30644102Arabidopsis halleriCannabis sativa16.1423.6889.32103forward
CNT3024497Arabidopsis halleriPopulus trichocarpa12.0727.485.7177forward
CNT30319296Arabidopsis halleriAsparagus officinalis14.5820.9982.893forward
CNT3065055Arabidopsis halleriSelaginella moellendorffii11.620.0585.1474forward
CNT3039904Arabidopsis halleriMarchantia polymorpha22.578.5581.94144forward

Expression of CNT30477407

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MEQIHANMLKLISIFTKIKALSSSFSTQTLRNLITVKRRILGEVE*

>peptide 2 (42 aa)
MFQEAISNYVTWSGNLQGHESHERFSWRQLLRRLCIQGQKCQ*

>peptide 3 (37 aa)
YKALAGKQQIQCETMGISLSFTLMAASSSLISIVSSN*

Sequence

>CNT30477407
TTACAAAGCTTTAGCCGGTAAGCAACAAATTCAATGTGAAACCATGGGAATCAGTCTTTCGTTCACACTAATGGCTGCTTCAAGTTCACTCATTTCAATT
GTTTCTAGCAACTAAGTTACATGGACTGGTTACTAACGGGGACATGAGAGTCACTCACACTCAAGGCAGCATAAAGTTCACTAATTTCAAATGTTTCAAG
AAGCTATAAGCAACTATGTTACATGGAGTGGTAACTTACAGGGACATGAGAGTCACGAGCGTTTCTCTTGGCGTCAGTTGCTGAGAAGACTGTGTATACA
AGGACAAAAGTGCCAATAATCTCAGCTCCAAGACCACTTCCTTTGGTGTAACCATGAGCCACAGTGTTAGCTCCTCCTCCTAGAGCCTGGTATTGCTTAG
GCCAAAGGACACAATTCAGATTAAAACACTGCAAATTCCACAAAGATTGTAGCTTTCTGAGATTTCTCAAAGATTTCTTGAATCAGATCCAAATGGAACA
AATTCACGCAAATATGCTAAAACTAATCTCAATTTTCACAAAGATTAAAGCTTTATCGTCTTCTTTCTCAACCCAAACACTCAGAAACCTAATTACAGTA
AAAAGGCGTATCCTTGGAGAAGTAGAGTGACTTACCGG