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Detailed information on CNT3061285


BLAST search results

BLAST vs Swiss-Prot:
sp|P61838|PIP11_VICFA, E-value = 1e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548370Arabidopsis lyrataIpomoea triloba11.8336.9186.0586forward
CNT30375144Arabidopsis lyrataArabidopsis thaliana37.2866.9195.57271forward
CNT30709876Arabidopsis lyrataGlycine max12.7926.0587.193forward
CNT30287172Arabidopsis lyrataTriticum aestivum17.8851.5981.54130forward
CNT30224613Arabidopsis lyrataHordeum vulgare14.0337.6483.33102forward
CNT30560769Arabidopsis lyrataActinidia chinensis20.522.2483.22149forward
CNT30590280Arabidopsis lyrataMusa acuminata17.1924.0883.2125forward
CNT30542732Arabidopsis lyrataBrassica napus36.5939.5889.47266forward
CNT30658930Arabidopsis lyrataTriticum dicoccoides16.9251.4681.3123forward
CNT30261241Arabidopsis lyrataBrassica rapa36.1872.2589.35263forward
CNT30613102Arabidopsis lyrataArabis alpina11.4231.9285.5483forward
CNT30227661Arabidopsis lyrataAnanas comosus9.0828.9590.9166forward
CNT30477407Arabidopsis lyrataArabidopsis halleri22.2825.3998.77162forward
CNT30595656Arabidopsis lyrataOryza meridionalis10.1822.1686.4974forward
CNT30644102Arabidopsis lyrataCannabis sativa13.222.0790.6296forward
CNT3024497Arabidopsis lyrataPopulus trichocarpa10.5927.484.4277forward

Expression of CNT3061285

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MIAAPRLLAGLMPVPVIGMGHESHERFSWRQLLRTLCIQGQKCQ*

>peptide 2 (43 aa)
MEQILAKKLKLISIFSKIIAFSTQTLRNLITVKKAYPFGEGEK*

Sequence

>CNT3061285
GGGAAACTCACGTGGTCGTCCCATGAATGGTCTTTGTTGTAGATGATTGCAGCTCCAAGACTTCTAGCTGGGTTGATGCCTGTGCCAGTGATTGGGATGG
GACATGAGAGTCACGAGCGTTTCTCTTGGCGTCAGTTGCTGAGAACACTGTGTATACAAGGACAAAAGTGCCAATAATCTCAGCTCCAAGACCACTTCCT
TTGGTGTAACCATGAGCCACAGTGTTGGCTCCTCCTCCTAGAGCCTGGTATTGCTTAGGCTGGAACCCTTTGACCACGCCAGCACCACAGATGGCTCCCA
AGCACTGCATCACTATGTAGTACAGAGCTCTGGTAAGCGACAGCTTCCGGGCTAAGAACAGACCAAAAGTAACCGCCGGGTTGATGTGTCCACCTGAGAG
TTACATGAACAAATACATTCCAAGATTAAGCCAAGGATACAATTCAGATTAGAACACTACAAATTCCACAAAGATTGTAGGCTACAAATTTGTGGAATTT
GTTCAAGATTCAAGATTTTGCGTGAATTTGTTCCACAATTTGTAGCTTTCTGAGATATCTCAAAGATTTCTTGAATCAGATCCAAATGGAACAAATTCTC
GCAAAGAAGCTAAAACTAATCTCAATTTTCTCAAAGATTATAGCTTTCTCCACCCAAACACTCAGAAACCTAATTACAGTAAAAAAGGCGTATCCTTTTG
GAGAAGGAGAGAAGTAGAGTGACTTAC