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Detailed information on CNT3065055


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Selaginella moellendorffiiOryza sativa21.9512.7283.9581forward
CNT30676770Selaginella moellendorffiiSetaria viridis23.5841.2385.0687forward
CNT30524031Selaginella moellendorffiiSetaria italica16.822.5587.162forward
CNT30549116Selaginella moellendorffiiIpomoea triloba2937.6888.79107forward
CNT30375144Selaginella moellendorffiiArabidopsis thaliana26.0223.784.3896forward
CNT3019525Selaginella moellendorffiiCitrullus lanatus15.4526.0394.7457forward
CNT30728378Selaginella moellendorffiiCorchorus capsularis33.069.7186.89122forward
CNT30709876Selaginella moellendorffiiGlycine max20.621.2989.4776forward
CNT3044723Selaginella moellendorffiiPrunus dulcis24.129.7589.8989forward
CNT30159582Selaginella moellendorffiiPistacia vera15.1821.6289.2956forward
CNT3095762Selaginella moellendorffiiSolanum tuberosum24.124.9485.3989forward
CNT30221132Selaginella moellendorffiiHordeum vulgare17.6228.1487.6965forward
CNT30564990Selaginella moellendorffiiActinidia chinensis24.6621.5184.6291forward
CNT30590202Selaginella moellendorffiiMusa acuminata22.499.1886.7583forward
CNT30542732Selaginella moellendorffiiBrassica napus20.0511.0189.1974forward
CNT30435838Selaginella moellendorffiiAegilops tauschii17.6226.187.6965forward
CNT3060017Selaginella moellendorffiiArabidopsis lyrata26.0211.9483.3396reverse complement
CNT30261241Selaginella moellendorffiiBrassica rapa20.0520.3386.4974forward
CNT30599410Selaginella moellendorffiiFraxinus excelsior26.0214.4888.5496forward
CNT30680173Selaginella moellendorffiiTriticum urartu17.6226.7587.6965forward
CNT30477407Selaginella moellendorffiiArabidopsis halleri20.0511.685.1474forward
CNT30365858Selaginella moellendorffiiSorghum bicolor22.4922.9386.7583forward
CNT30354871Selaginella moellendorffiiLactuca sativa18.4320.885.2968forward
CNT30704435Selaginella moellendorffiiPrunus avium24.1213.4688.7689forward
CNT30644102Selaginella moellendorffiiCannabis sativa30.6225.9886.73113forward
CNT30319296Selaginella moellendorffiiAsparagus officinalis30.8925.7385.96114forward
CNT30118191Selaginella moellendorffiiCitrus clementina31.4411.1687.07116forward
CNT3038976Selaginella moellendorffiiCucumis melo24.1213.0384.2789forward
CNT30575194Selaginella moellendorffiiOryza barthii18.733.6685.5169forward
CNT30112149Selaginella moellendorffiiFicus carica21.149.9488.4678forward
CNT3050399Selaginella moellendorffiiCucumis sativus28.7311.6182.08106forward

Expression of CNT3065055

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MEEETYRDMGVSGTSLGISGGEDRVDENEGTNNLSSKTISNGVAVVDIVGSSSRGVELCLLEAFDDSSPANRPQAL

>peptide 2 (65 aa)
MRGESTKALDGRRNVPGHGSLWHFSWHQWRRRPCRRERRYQQSQLQDHLQWCSRGGHSWLLLPRR*

>peptide 3 (37 aa)
LNLSMRRRRDKEKIRGSTARKTRKTTQEDKKKKSKTS*

Sequence

>CNT3065055
CTTAAATCTATCCATGAGGAGGAGAAGAGATAAGGAGAAGATAAGAGGAAGTACAGCAAGAAAAACTAGGAAAACCACACAAGAAGATAAGAAGAAGAAA
AGCAAAACTTCATGAGAGGGGAATCAACCAAAGCTTTGGATGGAAGAAGAAACGTACCGGGACATGGGAGTCTCTGGCACTTCTCTTGGCATCAGTGGCG
GAGAAGACCGTGTAGACGAGAACGAAGGTACCAACAATCTCAGCTCCAAGACCATCTCCAATGGTGTAGCCGTGGTGGACATAGTTGGCTCCTCCTCCCG
CGGCGTTGAACTTTGCCTTTTGGAAGCCTTTGACGACTCCAGCCCCGCAAATCGCCCCCAGGCACTGCG