Detailed information on CNT30675752


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 2e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30270368Setaria viridisChenopodium quinoa41.8246.4679.42243forward
CNT30526306Setaria viridisPhaseolus vulgaris21.5113.3483.2125forward
CNT30709355Setaria viridisGlycine max21.6918.186.51126forward
CNT30395365Setaria viridisTriticum turgidum40.7986.8192.41237forward
CNT30591239Setaria viridisMusa acuminata34.671.7988.06201forward
CNT308181Setaria viridisZea mays32.0133.8896.77186forward
CNT30685421Setaria viridisTriticum urartu30.4674.3793.79177forward
CNT30339489Setaria viridisEragrostis tef33.3911.4197.42194forward
CNT3038035Setaria viridisCucumis melo28.2333.2780.49164forward
CNT30103133Setaria viridisOryza rufipogon41.3133.4391.25240forward

Expression of CNT30675752

Peptides detected in this lncRNA

>peptide 1 (38 aa)
ILIKQSLPLTTLVINVHTNHPSVLTLLTMHTALLQHSP*

>peptide 2 (62 aa)
MYIPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRFNVCPPVPISPPNW*

>peptide 3 (78 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAHRPFTSSACTNHRRFSGSSARPSGSKPLSPGRL

Sequence

>CNT30675752
AGATACTGATCAAACAATCTCTACCCTTAACCACCCTTGTCATTAATGTACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATT
ATTACAACACAGTCCTTAATCTCCTCTCCGGATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTTTCAATGTATG
TCCTCCTGTCCCCATCAGCCCACCAAATTGGTGATCACTCCCCGTGCTGCAGCAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTT
CTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTACTCCGACTTGCCGGCG
TCGTACCACTGCGGCGCGTTGATGAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCT
CCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGGCCCAGCGGGTCGAAACCATTGTCGCCCGGCAGGCTGC