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Detailed information on CNT30685421


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 8e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Triticum urartuOryza sativa77.7318.1989.19185forward
CNT30675752Triticum urartuSetaria viridis74.3730.4693.79177forward
CNT30523687Triticum urartuSetaria italica64.2921.6494.77153forward
CNT30270368Triticum urartuChenopodium quinoa27.3112.4386.1565forward
CNT30300691Triticum urartuTriticum aestivum96.2225.5699.13229forward
CNT30224033Triticum urartuHordeum vulgare41.622.398.9999forward
CNT30394114Triticum urartuTriticum turgidum10071.997.06238forward
CNT30591239Triticum urartuMusa acuminata74.7963.5784.27178forward
CNT30554723Triticum urartuOryza glaberrima49.168.5787.18117forward
CNT308181Triticum urartuZea mays56.324.4193.28134forward
CNT30339489Triticum urartuEragrostis tef70.599.8891.67168forward
CNT30370931Triticum urartuOryza glumipatula77.7310.7289.73185forward
CNT3038035Triticum urartuCucumis melo20.599.9491.8449forward
CNT30103133Triticum urartuOryza rufipogon77.7325.7789.73185forward
CNT30577305Triticum urartuOryza barthii45.3811.8795.37108forward
CNT30117373Triticum urartuOryza nivara77.7311.8289.73185forward
CNT30604463Triticum urartuOryza punctata70.1714.2488.62167forward

Expression of CNT30685421

Peptides detected in this lncRNA

>peptide 1 (77 aa)
VGELLLLVLEGGGGGEVGLLAGVVPLGRVQQPRLGQHLRDQHPRHPQHRPPPVHQLRLHEPPQVLRVLRQRQRVEPIV

>peptide 2 (78 aa)
RWRAPSPCSRGWGRRRSRSPCRRRTTRARSAAPPWSAPPGSASPPPPASPTARSPAPPARTTAGPPGPPPAPAGRTHCH

Sequence

>CNT30685421
CCGTTGGCGAGCTCCTTCTCCTTGTTCTCGAGGGTGGGGGAGGAGGCGAAGTAGGTCTCCTTGCCGGCGTCGTACCACTCGGGCGCGTTCAGCAGCCCCG
CCTTGGTCAGCACCTCCGGGATCAGCATCCCCGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTCCTCCGG
GTCCTCCGCCAGCGCCAGCGGGTCGAACCCATTGTCAC