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Detailed information on CNT30370931


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 1e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Oryza glumipatulaOryza sativa25.9644.0599.78448forward
CNT30675792Oryza glumipatulaSetaria viridis20.3450.3693.16351forward
CNT30523568Oryza glumipatulaSetaria italica22.2536.4793.75384forward
CNT30300839Oryza glumipatulaTriticum aestivum22.5436.4691.52389forward
CNT30395365Oryza glumipatulaTriticum turgidum13.7386.8190.72237forward
CNT30591239Oryza glumipatulaMusa acuminata10.7266.0787.03185forward
CNT308181Oryza glumipatulaZea mays10.7833.8891.4186forward
CNT30685421Oryza glumipatulaTriticum urartu10.7277.7389.73185forward
CNT30573808Oryza glumipatulaVitis vinifera15.1241.0480.08261forward
CNT3038035Oryza glumipatulaCucumis melo8.8130.8381.58152forward
CNT30117373Oryza glumipatulaOryza nivara56.0861.8597.52968forward
CNT30604463Oryza glumipatulaOryza punctata22.1332.5797.38382forward

Expression of CNT30370931

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MGGVASYPALSGCRDTGESKGGFLLDGGLSCGWLLLPRRTGEMVGADRSEPRIFMLLDHSTHVYVL*

>peptide 2 (62 aa)
MMVLCHGSDRCCSRLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFF*

>peptide 3 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 4 (50 aa)
MMLSTGSRNIFFLCVCSPAVEVGRLERRRRAEGCDRGAGGDRRHGLASPA*

>peptide 5 (34 aa)
MLLRVLVRIVPLASSFSLASRVGSKLRGLKTLPG*

>peptide 6 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 7 (33 aa)
SVRIFFLSLNRYAILNQCANEALDKQLTVVYPP*

>peptide 8 (37 aa)
MHTPQKKKEETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 9 (42 aa)
MEVSAVAGCCCHVGRVRWLVQIARSLGFLCCWITQLTYMYFRF

>peptide 10 (49 aa)
MRCWVGVANGRRRLLSSVIRMPGYGGIKGRVSIGWRSQLWLVAAATSDG*

Sequence

>CNT30370931
AATCTGTACGGATTTTTTTTTTGTCTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAACCGTAGTTTATCCACC
ATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACT
CACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTC
CTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCAC
CAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGAT
CAGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAAC
AACAACATCAACAAAAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTCTGATATATTGACGTGCAATGCTTTTACGTGTTTTGG
TTAGAATCGTACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGG
CGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAAC
TCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCCG
GCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAA
CGGGTCGAACCCGTTATCGCCTGGCAAGCTGTACACACCCGTTTAACTATCGTGTTAGTAGTTTCTTATGATGCTCTCTACTGGTAGTAGAAATATATTT
TTTTTATGTGTGTGCTCACCTGCCGTTGAGGTAGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACAGACGCCATG
GCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAAC
TGTCCGGGAGTGGCCGGCGCTGCCAGGTGGCCACGGCGGCGAGGGCGGCGACGGACGGCGGAGATCGGCGGTGGGGGTGGATCGGACGGCCAGGATGCGT
TGTTGGGTGGGTGTGGCCAATGGGAGGCGTCGCCTCTTATCCAGCGTTATCCGGATGCCGGGATACGGGGGAATCAAAGGGAGGGTTTCTATTGGATGGA
GGTCTCAGCTGTGGCTGGTTGCTGCTGCCACGTCGGACGGGTGAGATGGTTGGTGCAGATCGCTCGGAGCCTCGGATTTTTATGTTGCTGGATCACTCAA
CTCACGTATATGTACTTTAGGTTTTG