« Back to Setaria italica search


Detailed information on CNT30523687


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513114Setaria italicaJuglans regia13.4432.8785.2695forward
CNT30270368Setaria italicaChenopodium quinoa34.3746.4679.42243forward
CNT30224179Setaria italicaHordeum vulgare16.9728.4491.67120forward
CNT30395365Setaria italicaTriticum turgidum33.5286.8192.41237forward
CNT30591239Setaria italicaMusa acuminata24.0560.7187.65170forward
CNT30554596Setaria italicaOryza glaberrima43.8518.0890.32310forward
CNT308181Setaria italicaZea mays26.3133.8896.77186forward
CNT30205828Setaria italicaHelianthus annuus16.2729.8784.35115forward
CNT30626732Setaria italicaDaucus carota21.512.1484.87152forward
CNT30685421Setaria italicaTriticum urartu21.6464.2994.77153forward
CNT30339489Setaria italicaEragrostis tef24.059.9998.24170forward
CNT30358059Setaria italicaLactuca sativa40.1726.7278.87284forward
CNT30573808Setaria italicaVitis vinifera36.9241.0480.84261forward
CNT3038035Setaria italicaCucumis melo23.233.2780.49164forward
CNT30150529Setaria italicaBrachypodium distachyon17.430.5285.37123forward
CNT30103133Setaria italicaOryza rufipogon28.7128.2793.1203forward

Expression of CNT30523687

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLCHGSDRCCSRLSKGPLPVTLCWIRNPRNASMASLPA*

>peptide 2 (48 aa)
LRIKHTSQTDDPHRKEFTSIAYQCMSSCPHQPTKLVITPRRLNRRKSG*

>peptide 3 (35 aa)
SGLNTHHKLMIHTERNSHRSRINVCPPVPISPPNW*

>peptide 4 (38 aa)
MVSKHLKLPADGDRVVTGSDATHRWRAPSPWPRAWARS*

>peptide 5 (66 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAHRPFTSSACTNHRRFSGSSAR

Sequence

>CNT30523687
CTCCGGATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTATCAATGTATGTCCTCCTGTCCCCATCAGCCCACCA
AATTGGTGATCACTCCCCGTCGACTCAACCGGAGAAAGTCTGGATGATGGTGTTGTGCCATGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCC
TTGCCGGTGACGTTGTGCTGGATCAGGAACCCCAGGAACGCCAGCATGGCCAGCCTCCCTGCATGAACAGGCACATCACATCCGGATATGGTTAGTAAAC
ATTTAAAGTTGCCGGCGGACGGCGACCGTGTAGTCACGGGATCAGACGCTACTCACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGCGTGGGCGCGAAG
TTGAGCGGGTTGAAGACGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGA
AGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTACTCCGACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATGAGCCCGGCCTTGGT
CAGCACCTCCGGGATCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCC
GCCAGGC