Detailed information on CNT30103133


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675752Oryza rufipogonSetaria viridis33.4341.3191.25240forward
CNT30523687Oryza rufipogonSetaria italica28.2728.7193.1203forward
CNT30224033Oryza rufipogonHordeum vulgare16.9927.4884.43122forward
CNT30395365Oryza rufipogonTriticum turgidum26.7470.3389.06192forward
CNT30591239Oryza rufipogonMusa acuminata25.7766.0787.03185forward
CNT308181Oryza rufipogonZea mays25.9133.8891.4186forward
CNT30685421Oryza rufipogonTriticum urartu25.7777.7389.73185forward
CNT30339489Oryza rufipogonEragrostis tef23.49.8891.67168forward
CNT30370824Oryza rufipogonOryza glumipatula89.5548.4297.51643forward
CNT3038035Oryza rufipogonCucumis melo21.1730.8381.58152forward

Expression of CNT30103133

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MHTPQKKKKETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 2 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 3 (34 aa)
MHPDSCMQETITTTHTVSLNLITSISLSLLPPIH*

Sequence

>CNT30103133
TGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAG
CTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATTC
ATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATA
CATGCATACTCCACAAAAAAAAAAAAAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAG
ATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGATGAACTCGATGACGAACA
GCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCCGGCAGCAGCATCCC
GGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCG
TTATCGCCTGGCAAGCTG