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Detailed information on CNT30339489


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LCQ4|LHCA6_ARATH, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Eragrostis tefOryza sativa8.3556.1383.1142forward
CNT30675752Eragrostis tefSetaria viridis11.4133.3997.42194forward
CNT30523687Eragrostis tefSetaria italica9.9924.0598.24170forward
CNT30394114Eragrostis tefTriticum turgidum9.8850.7691.67168forward
CNT30591239Eragrostis tefMusa acuminata15.8796.4384.44270forward
CNT30436586Eragrostis tefAegilops tauschii7.6456.5283.08130forward
CNT30244600Eragrostis tefAvena sativa9.2366.8181.53157forward
CNT30659042Eragrostis tefTriticum dicoccoides7.7645.0583.33132forward
CNT308181Eragrostis tefZea mays9.4729.3396.89161forward
CNT30685421Eragrostis tefTriticum urartu9.8870.5991.67168forward
CNT3038035Eragrostis tefCucumis melo8.3528.880.99142forward
CNT30150529Eragrostis tefBrachypodium distachyon7.5231.7684.38128forward
CNT30103133Eragrostis tefOryza rufipogon9.8823.491.67168forward
CNT30581231Eragrostis tefEchinochloa crusgalli647.2284.31102forward
CNT30117377Eragrostis tefOryza nivara3.7631.3796.8864forward
CNT30556637Eragrostis tefPanicum hallii646.5883.33102forward

Expression of CNT30339489

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MEMSHSQDICYRVLICAHNVEGHSKSFTIMYLNLELVLFNFARKKELVLFDVGTSLHILYMKLFYLEYINNYMCA*

>peptide 2 (54 aa)
MPTTTDLTYNGTMLIFVNVAYWFLCCSCCSLGTLATASVCCTVLFRRIKVEGFF*

>peptide 3 (42 aa)
MMVLCHGSDRCCSRLSKGPLPVTLCWMRNPRNASIASLPAND*

>peptide 4 (45 aa)
MRPALVSTSGISIPATPSIAHRPFTSSACTNHRRFSGSSARPSGSK

>peptide 5 (44 aa)
MILSVTKLKHSQATSRAQTERSLPIASPVINVHTIQAILQHGLN*

Sequence

>CNT30339489
AATAAATAAAATAAATAAAATATTTACATATTGGGTTAAAAATAAAAGTGTATTAAAACTCCATTGATAAGGCTTACTATACAACTTTACCTTTTTAAAT
TGATATTAACTTAACTTACTTCATTTAAAATGGAGATGTCGCATTCTCAAGACATTTGTTATAGAGTTCTAATATGTGCACACAATGTTGAAGGCCACTC
TAAAAGCTTTACTATCATGTATTTGAATTTAGAACTCGTGTTATTTAACTTCGCAAGAAAAAAAGAACTCGTGCTATTTGATGTTGGTACTTCTTTACAC
ATCCTCTATATGAAACTATTTTATTTGGAATATATAAACAACTACATGTGTGCCTGAATCAACAATTCAAGACTCACCCCTTGGTCGCTATCAGAGGGTT
GCACCAGGGCCCCAACTAGTTCATCGGTGCCAACACTAGCTCCCTCTTGTTACTCGCGACACTGCGACAGCACCTGCCCTCCAATTGCAGAAGTAAAGTG
CGTGAATCCCAATATTAGATATTGGAAAAATTAGATGAAGGTTCATTAATGGATTTGAGTGCTATGGGCGCAGTGGCGGCCATGAGAAGGTTTTGCGGGA
GGATTGAGTATGGAGGAAGTTTCTCACGCTGAAGCGTCGTAGGCGGTTGATTAAGGTTCCCGGGTTGATTGTCTACTCTAGAGGTTACCATTATAACTAA
TGCCAACTACAACAGATCTCACCTACAATGGCACCATGTTAATTTTTGTGAATGTTGCATATTGGTTCCTTTGTTGCAGTTGTTGTTCTCTAGGCACACT
AGCTACAGCTAGTGTGTGTTGCACTGTGTTATTTAGAAGAATCAAAGTTGAAGGCTTTTTTTAAGCATAATTAGCATTATGTGTAAAATAATGTACTAGT
ATCACTCGTGATAATCATGATACTATCTGTCACCAAATTGAAGCATTCACAAGCAACAAGTAGAGCACAAACTGAGCGGTCTCTACCCATAGCCTCCCCT
GTCATTAATGTACATACCATTCAGGCAATATTACAACATGGTCTGAACTGAATCTCCTCTCCAGATCGTTAACACACAGCACATCACACACACTGATCCA
GGGAGGAATTAACACCAATCGTTCCAGGGTGTTTTGTTGCACGTATAATTTACATCGGTCCACAAAACTGAACTCAGCTGGAGAGCGTCTGGATGATGGT
GTTGTGCCATGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTGCCGGTGACGTTGTGCTGGATGAGGAACCCCAGGAACGCAAGCATCGCC
AGCCTCCCTGCAAACGATTAATTGTTAGCGACATTCCAGAGAAGGAAGTCGTGTGAGGATCGGCCAGGCAGTACGCTACTCACCGTTGGCGAGCTCCTTC
TCCTTGGCCTCGAGCGTGGGCGCGAAGTTGAGCGGGTTGAAGACGCTGCCTGGGTAGCCGCACTCGTGCGGCGGCAGGCTGTAGCTCTTGAAGATGGGGT
CCTGGTTGACGAGGACGCGAAGTACTCCGACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATGAGGCCGGCCTTGGTCAGCACCTCCGGGATCAGCATC
CCGGCCACGCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCAGCAAGGCCCAGCGGGTCGAAAC
C