Detailed information on CNT30255936


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524157Avena sativaSetaria italica41.8512.6390.91154forward
CNT30708950Avena sativaGlycine max25.2724.0982.893forward
CNT30223084Avena sativaHordeum vulgare55.7126.2887.32205forward
CNT30237226Avena sativaBrassica oleracea24.4619.8787.7890forward
CNT30439071Avena sativaAegilops tauschii35.639.2294.66131forward
CNT30664005Avena sativaTriticum dicoccoides98.3781.3585.91362forward
CNT3075914Avena sativaBrassica juncea21.212.8789.7478forward
CNT30462400Avena sativaSaccharum spontaneum41.5811.2484.97153forward
CNT30136123Avena sativaLolium perenne58.739.8590.74216forward
CNT307142Avena sativaZea mays35.610.4688.55131forward
CNT30217689Avena sativaKalanchoe fedtschenkoi21.4726.3389.8779forward
CNT30684371Avena sativaTriticum urartu92.6692.9287.68341forward
CNT30348317Avena sativaEragrostis tef41.8522.9588.96154forward
CNT30365786Avena sativaSorghum bicolor39.455.9884.14145forward
CNT30570222Avena sativaVitis vinifera25.2718.6483.8793forward
CNT30150970Avena sativaBrachypodium distachyon17.1226.1496.8363forward
CNT30582099Avena sativaEchinochloa crusgalli22.2815.2189.0282forward
CNT30595262Avena sativaEragrostis curvula40.7620.7889.33150forward
CNT30557232Avena sativaPanicum hallii41.322.8690.79152forward

Expression of CNT30255936

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPSLAAAASPSLLALARSRSASCAAATFSGRPPHVLRQVFWSARA*

>peptide 2 (43 aa)
NAVYFLSISPSELVSTCKQRGHTAWLRCPQAAQGATSTLSIGR*

Sequence

>CNT30255936
TAAACGCAGTATACTTTCTGTCCATCTCTCCATCAGAGCTGGTCTCGACCTGTAAACAACGAGGACACACTGCCTGGCTAAGGTGCCCTCAAGCTGCTCA
AGGCGCTACTAGCACTCTCTCCATAGGTAGATAAGTAGCTCGCCGGCCGGACGATCAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCGGCCGCG
GCCTCGCCGTCGCTGTTGGCCTTGGCGCGCAGCAGAAGCGCCTCCTGCGCCGCCGCGACGTTCTCTGGCCGCCCGCCCCACGTCTTGAGGCAGGTGTTCT
GGAGTGCCCGCGCGTAGGAGAAGGATACGTGCCACGGGTTGGGCGCCTGGTTCATCGCGTTCAGGTTC