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Detailed information on CNT30582099


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Echinochloa crusgalliOryza sativa30.2412.6793.25163forward
CNT30677157Echinochloa crusgalliSetaria viridis31.9156.9592.44172forward
CNT30524148Echinochloa crusgalliSetaria italica31.3525.6492.9169forward
CNT30639585Echinochloa crusgalliNymphaea colorata9.4621.2590.251forward
CNT30727836Echinochloa crusgalliCorchorus capsularis1826.0882.4797forward
CNT30381205Echinochloa crusgalliManihot esculenta16.8822.8187.9191forward
CNT30223084Echinochloa crusgalliHordeum vulgare26.7218.4690.28144forward
CNT30255936Echinochloa crusgalliAvena sativa15.2122.2889.0282forward
CNT30662744Echinochloa crusgalliTriticum dicoccoides29.6829.9690160forward
CNT30139084Echinochloa crusgalliLolium perenne30.2419.4591.41163forward
CNT3017013Echinochloa crusgalliZea mays47.8741.0889.53258forward
CNT3068263Echinochloa crusgalliLeersia perrieri30.2421.4293.87163forward
CNT30684371Echinochloa crusgalliTriticum urartu15.2122.3489.0282forward
CNT30367530Echinochloa crusgalliSorghum bicolor31.3549.7191.12169forward
CNT30371242Echinochloa crusgalliOryza glumipatula30.2424.8993.25163forward
CNT30150970Echinochloa crusgalliBrachypodium distachyon28.9464.7387.82156forward
CNT30104230Echinochloa crusgalliOryza rufipogon30.616.793.33165forward
CNT30595262Echinochloa crusgalliEragrostis curvula30.6122.8589.09165forward
CNT30557232Echinochloa crusgalliPanicum hallii31.3525.4191.72169forward

Expression of CNT30582099

Peptides detected in this lncRNA

>peptide 1 (35 aa)
LLDFVGKIQREADRQSSHNSSKPCKNTVTRFHIFT*

>peptide 2 (76 aa)
MPSLASAASPSLLYLPSCARELALARSSSASCAALTFSGRPAHVLRQVRRTHAMGWGSGSWRSGSWSPQPQTAHQTG

Sequence

>CNT30582099
GTCTGCTCGACTTTGTCGGTAAAATACAGAGAGAGGCAGATCGACAAAGCTCACACAACTCTAGCAAACCATGCAAAAATACAGTAACCCGATTCCATAT
TTTCACTTAGGATAGTAATTAAAACTGCATGCAGTGTGTACCATCTAAACCTGTAATGGCACACTGCCTACGGTGCCCTCGAGGTTGGTACTAGCAGCGA
GCTTAGTATCATCATCATCGTCTTAATAGACGTAGTACGATCTTGACGAACAATCATGCCCTCGATCATTGGCCGTACGTCTTAGTAGACGTAGTTCTTG
ACGAACATGCCCTCATTGGCCTCGGCGGCCTCGCCGTCGCTGCTGTACTTGCCGAGCTGCGCCAGGGAGTTGGCCTTGGCACGCAGCAGCAGCGCGTCCT
GCGCCGCCTTGACGTTCTCCGGCCGGCCGGCCCATGTCTTGAGGCAGGTGAGAAGGACACATGCCATGGGTTGGGGCTCTGGTTCATGGCGTTCAGGTTC
TTGGTCGCCTCAACCTCAGACTGCCCACCAGACAGGAAC